View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17654_high_6 (Length: 404)
Name: NF17654_high_6
Description: NF17654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17654_high_6 |
 | |
|
| [»] scaffold0257 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 8 - 388
Target Start/End: Original strand, 41959129 - 41959477
Alignment:
| Q |
8 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataattactcccaatac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41959129 |
aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
41959228 |
T |
|
| Q |
108 |
caataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacattcatatt |
207 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41959229 |
caataccaaaattaattaa----attcaatcatccttcaataccaat-------------------acatatggttcatctagtaaatcacattcatatt |
41959305 |
T |
|
| Q |
208 |
ttaatccaaatactagtgtcatgctttgtttttcaaacattctattattccataataatctcacgtgcacctacaaaacttctcatcattgctatctccc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41959306 |
ttaatccaaatactagtgtcatgctttgtttttcaaacattccattattccataataatctcacgtgcacctacaaaacttctcatcattgctatctccc |
41959405 |
T |
|
| Q |
308 |
tcgtatgcttactctcatgattacttctcatctgcaacactgtttaatggaacaacttattcaaattttatgcagagttca |
388 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41959406 |
tcgtatgcttactctcatgat---------tctgcaacactgtttaatggaacaacttattcaaattttatgcagagttca |
41959477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 13984993 - 13984804
Alignment:
| Q |
8 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataattactcccaatac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13984993 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
13984894 |
T |
|
| Q |
108 |
caataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacatt |
201 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13984893 |
caataccaaaattaa----ttaaattcaatcatccttcaataccaatacatactggcaataccaatacatatggttcatctagtaaatcacatt |
13984804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 3943111 - 3943300
Alignment:
| Q |
8 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataattactcccaatac |
107 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3943111 |
aaggacaagctaatttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
3943210 |
T |
|
| Q |
108 |
caataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacatt |
201 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3943211 |
caataccaa----aattaattaaattcaatcatccttcaataccaatacatactggcaataccaatacatatggttcatctagtaaatcacatt |
3943300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 9588721 - 9588910
Alignment:
| Q |
8 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataattactcccaatac |
107 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9588721 |
aaggacaatctattttgacacaaaagttcctattatacccttgtctttgattttctccattttacatttatttaccccatctcataattactcccaatac |
9588820 |
T |
|
| Q |
108 |
caataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacatt |
201 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9588821 |
caataccaa----aattaattaaattcaatcatccttcaataccaatacatactggcaataccaatacatatggttcatctagtaaatcacatt |
9588910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 44228230 - 44228075
Alignment:
| Q |
8 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataattactcccaatac |
107 |
Q |
| |
|
||||||||||||| | |||| ||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||| ||||| ||| ||||||| |
|
|
| T |
44228230 |
aaggacaagctagct-gacataaaagttcctattatacccttgttttttatttccttcattttacatttatttaccccatctaataatcacttccaatac |
44228132 |
T |
|
| Q |
108 |
caataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaata |
168 |
Q |
| |
|
||||||||| | ||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
44228131 |
caataccaa----atttaattaaagtcaatcaaatggcaataccaatacataccggcaata |
44228075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 1168412 - 1168499
Alignment:
| Q |
8 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataatta |
97 |
Q |
| |
|
|||||||||||| |||||||||||||||| || | |||||||||||||||||||||||||||| ||||||||||||| || |||||||| |
|
|
| T |
1168412 |
aaggacaagctattttgacacaaaagttcatagtttacccttgtctttgatttcctccatttt--atttatttaccccgtctcataatta |
1168499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 9e-86; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 10646643 - 10646832
Alignment:
| Q |
8 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataattactcccaatac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10646643 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
10646742 |
T |
|
| Q |
108 |
caataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacatt |
201 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10646743 |
caataccaa----aattaattaaattgaatcatccttcaataccaatacatactggcaataccaatacatatggttcatctagtaaatcacatt |
10646832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 40486455 - 40486266
Alignment:
| Q |
8 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataattactcccaatac |
107 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40486455 |
aaggacaagctaatttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
40486356 |
T |
|
| Q |
108 |
caataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacatt |
201 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40486355 |
caataccaaaattaa----ttaaattcaatcatccttcaataccaatacatactggcaataccaatacatatggttcatctagtaaatcacatt |
40486266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 8697900 - 8697711
Alignment:
| Q |
8 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataattactcccaatac |
107 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8697900 |
aaggacaaactagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
8697801 |
T |
|
| Q |
108 |
caataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacatt |
201 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8697800 |
caataccaaaattaa----ttaaattcaatcatccttcaataccaatatatactggcaataccaatacatatggttcatctagtaaatcacatt |
8697711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 41307963 - 41307774
Alignment:
| Q |
8 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataattactcccaatac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41307963 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
41307864 |
T |
|
| Q |
108 |
caataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacatt |
201 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41307863 |
caatatcaaaattaa----ttaaattcaatcatccttcaataccaatacatactgacaataccaatacatatggttcatctagtaaatcacatt |
41307774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 45278703 - 45278514
Alignment:
| Q |
8 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataattactcccaatac |
107 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45278703 |
aaggacaagctaatttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
45278604 |
T |
|
| Q |
108 |
caataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacatt |
201 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45278603 |
caataccaaaattaa----ttaaattcaatcatccttcaataccaatacatattggcaataccaatacatatggttcatctagtaaatcacatt |
45278514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 338 - 386
Target Start/End: Complemental strand, 41306760 - 41306712
Alignment:
| Q |
338 |
tctgcaacactgtttaatggaacaacttattcaaattttatgcagagtt |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41306760 |
tctgcaacactgtttaatggaacaacttattcaaattttatgcagagtt |
41306712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 41306892 - 41306848
Alignment:
| Q |
288 |
tctcatcattgctatctccctcgtatgcttactctcatgattact |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41306892 |
tctcatcattgctatctccctcgtatgcttactctcatgattact |
41306848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 9e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 2911550 - 2911361
Alignment:
| Q |
8 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataattactcccaatac |
107 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2911550 |
aaggacaagctaatttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
2911451 |
T |
|
| Q |
108 |
caataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacatt |
201 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2911450 |
caataccaaaattaa----ttaaattcaatcatccttcaataccaatacatactggcaataccaatacatatggttcatctagtaaatcacatt |
2911361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 25060135 - 25059946
Alignment:
| Q |
8 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataattactcccaatac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
25060135 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactctcaatac |
25060036 |
T |
|
| Q |
108 |
caataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacatt |
201 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25060035 |
caataccaaaattaa----ttaaattcaatcatccttcaataccaatacatactgacaataccaatacatatggttcatctagtaaatcacatt |
25059946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 9e-86; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 12094633 - 12094822
Alignment:
| Q |
8 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataattactcccaatac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12094633 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctctattttacatttatttaccccatctcataattactcccaatac |
12094732 |
T |
|
| Q |
108 |
caataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacatt |
201 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12094733 |
caataccaa----aattaattaaattcaatcatccttcaataccaatacataccgacaataccaatacatatggttcatctagtaaatcacatt |
12094822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 44277457 - 44277269
Alignment:
| Q |
8 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataattactcccaatac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44277457 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgattttctccattttacatttatttaccccatctcataattactcccaatac |
44277358 |
T |
|
| Q |
108 |
caataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacat |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44277357 |
caataccaaaattaa----ttaaattcaatcatccttcaataccaatacatactggcaataccaatacatatggttcatctagtaaatcacat |
44277269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 8 - 154
Target Start/End: Original strand, 38805296 - 38805444
Alignment:
| Q |
8 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataattactcccaatac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38805296 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
38805395 |
T |
|
| Q |
108 |
caataccaaaa--ttaattaattaaattcaatcatccttcaataccaat |
154 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
38805396 |
caataccaataccaaaattaattaaattcaatcatccttcaataccaat |
38805444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 19911560 - 19911704
Alignment:
| Q |
8 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataattactcccaatac |
107 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
19911560 |
aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccacctcataattactcccaatac |
19911659 |
T |
|
| Q |
108 |
caataccaaaattaattaattaaattcaatcatccttcaataccaatac |
156 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19911660 |
caataccaa----aattaattaaattcaatcatccttcaataccaatac |
19911704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 12 - 197
Target Start/End: Original strand, 40931677 - 40931857
Alignment:
| Q |
12 |
acaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataattactcccaataccaat |
111 |
Q |
| |
|
||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
40931677 |
acaagctagattaacacaaaagttcctattatactcttgtctttgatttcctccattttatgtttatttaccccatctcatagttactcccaataccaat |
40931776 |
T |
|
| Q |
112 |
accaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatca |
197 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||||||| ||||||| | ||||| ||||||||| |||||||||||||||||| |
|
|
| T |
40931777 |
accaaaattaattaa----agtcaat-atccttcaataccgatacatagtgacaataccaatacatacggttcatctagtaaatca |
40931857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 19911693 - 19911788
Alignment:
| Q |
102 |
caataccaataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacatt |
201 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
19911693 |
caataccaataccaaaatt----aattaaattcaatcatccttcaataccaatacatactggcaataccaatacatatggttcatctattaaatcacatt |
19911788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 4226757 - 4226856
Alignment:
| Q |
8 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataattactcccaatac |
107 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||| |||||| |
|
|
| T |
4226757 |
aaggacaaactagtttgacacaaa-gttcctattatacccttgtgtttgatttcctccatttt--atttatttaccccatctcataattactctcaatac |
4226853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 4235801 - 4235900
Alignment:
| Q |
8 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataattactcccaatac |
107 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||| |||||| |
|
|
| T |
4235801 |
aaggacaagctagtttgatacaaa-gttcctattatacccttgtgtttgatttcctccatttt--atttatttacccaatctcataattactctcaatac |
4235897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 8e-71; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 193 - 332
Target Start/End: Complemental strand, 34223221 - 34223082
Alignment:
| Q |
193 |
aatcacattcatattttaatccaaatactagtgtcatgctttgtttttcaaacattctattattccataataatctcacgtgcacctacaaaacttctca |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34223221 |
aatcacattcatattttaatccaaatactagtgtcatgctttgtttttcaaacattccattattccataataatctcacgtgcacctacaaaacttctca |
34223122 |
T |
|
| Q |
293 |
tcattgctatctccctcgtatgcttactctcatgattact |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34223121 |
tcattgctatctccctcgtatgcttactctcatgattact |
34223082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 34224380 - 34224262
Alignment:
| Q |
8 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataattactcccaatac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34224380 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
34224281 |
T |
|
| Q |
108 |
caataccaaaattaattaa |
126 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
34224280 |
caataccaaaattaattaa |
34224262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 388
Target Start/End: Complemental strand, 34222995 - 34222945
Alignment:
| Q |
338 |
tctgcaacactgtttaatggaacaacttattcaaattttatgcagagttca |
388 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34222995 |
tctgcaacgctgtttaatggaacaacttattcaaattttatgcagagttca |
34222945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 23518 - 23636
Alignment:
| Q |
8 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataattactcccaatac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
23518 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
23617 |
T |
|
| Q |
108 |
caataccaaaattaattaa |
126 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
23618 |
caataccaaaattaattaa |
23636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 19996717 - 19996599
Alignment:
| Q |
8 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataattactcccaatac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19996717 |
aaggacaagctagtttgacacaaaagttcctattatacctttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
19996618 |
T |
|
| Q |
108 |
caataccaaaattaattaa |
126 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
19996617 |
caataccaaaattaattaa |
19996599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 19361698 - 19361816
Alignment:
| Q |
8 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataattactcccaatac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
19361698 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttatatttatttaccccatctaataattactcccaatac |
19361797 |
T |
|
| Q |
108 |
caataccaaaattaattaa |
126 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
19361798 |
caataccaaaattaattaa |
19361816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 20541512 - 20541634
Alignment:
| Q |
8 |
aaggacaagctagtttgacacaaaagttcctattataccctt----gtctttgatttcctccattttacatttatttaccccatcgcataattactccca |
103 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| |||||||||||| |
|
|
| T |
20541512 |
aaggacaaactagttcgacacaaaagttcctattatacccttacttgtctttgatttcctctgttttacatttatttacctcatctcataattactcctg |
20541611 |
T |
|
| Q |
104 |
ataccaataccaaaattaattaa |
126 |
Q |
| |
|
||||||||| ||||| ||||||| |
|
|
| T |
20541612 |
ataccaatatcaaaactaattaa |
20541634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 15305214 - 15305099
Alignment:
| Q |
11 |
gacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatcgcataattactcccaataccaa |
110 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15305214 |
gacaagcaagtttgacacaaaagttcctattatacccttgtctttgatttcatccattttacatttatttaccccatctcataattactcccaataccaa |
15305115 |
T |
|
| Q |
111 |
taccaaaattaattaa |
126 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
15305114 |
taccaaaattaattaa |
15305099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 31485621 - 31485702
Alignment:
| Q |
90 |
cataattactcccaataccaataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatac |
175 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||| | ||||||| ||||||||||||||||||| |||| |||||| |
|
|
| T |
31485621 |
cataattacttcgaataccaataccaaaattaattaa----agtcaatcaaatggcaataccaatacataccggtaataccaatac |
31485702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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