View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17654_low_1 (Length: 612)
Name: NF17654_low_1
Description: NF17654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17654_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 550; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 14 - 595
Target Start/End: Complemental strand, 26993014 - 26992433
Alignment:
| Q |
14 |
aatattatagtacgaaatttccacatactaaaccaatattatagaggtttgaaggattcaatcaaactgtttagcatgagaataatatgaacgaagaatg |
113 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26993014 |
aatattatagtacaaaatttccacatactaaaccaatattatagaggtttgaaggattcaatcaaactgtttagcatgagaatagtatgaacgaagaatg |
26992915 |
T |
|
| Q |
114 |
aaaattttcttacattgtaccaatatggatcaagaaaaatatcatccactaaaatcaaatatcatttgatgagcaacctcaacaaagaatcataaaagaa |
213 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
26992914 |
aaaattttcttacattgtatcaatatggatcaagaaaaatatcatccactaaaaccaaatatcatttgatgagcaacctcaacaaagaatcataaaagga |
26992815 |
T |
|
| Q |
214 |
agtaacgagaataccttataaattttaattaatcttaaaattaatcaaaagtaatcttaagcagctgacaaggacatgaaagtagagattataaaaatgt |
313 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26992814 |
agtaaccagaataccttataaattttaattaatcttaaaattaatcaaaagtaatcttaagcagctgacaaggacatgaaagtagagattataaaaatgt |
26992715 |
T |
|
| Q |
314 |
aaggatctaaacaatcagaagtttatagcactaataatttatgaaattattcttaagtgaactataaatttatgtgcatcaaattagcaatacgttctaa |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26992714 |
aaggatctaaacaatcagaagtttatagcactaataatttatgaaattattcttaagtgaactataaatttatgtgcatcaaattagcaatacgttctaa |
26992615 |
T |
|
| Q |
414 |
aattctatattataatcctaaatgactgtttccttggatatataagattagcatgagaaaaatataaattttaagatagcaccatacattcttatgtttc |
513 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26992614 |
aattctatattataatcctaaatgaccgtttccttggatatacaagattagcatgagaaaaatataaattttaagatagcaccatacattcttatgtttc |
26992515 |
T |
|
| Q |
514 |
tcagaagaactataaattttatgtttgtaagcttaacgtaatatatatccttaatatttaatgtaagtagaagcttgatact |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26992514 |
tcagaagaactataaattttatgtttgtaagcttaacgtaatatatatccttaatatttaatgtaagtagaagcttgatact |
26992433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 54681158 - 54681381
Alignment:
| Q |
18 |
ttatagtacgaaatttccacatactaaaccaatattatagaggtttgaaggattcaatcaaactgtttagcatgagaataatatgaacgaagaatgaaaa |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||| |||||| |||||||| ||| |
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|
| T |
54681158 |
ttatagtacgaaattttcacatactaaaccaattttatagaggtctgaaggattcaatcaaactgtttagcatgagtatagtatgaatgaagaatggaaa |
54681257 |
T |
|
| Q |
118 |
ttttcttacattgtaccaatatggatcaagaaaaatatcatccactaaaatcaaatatcatttgatgagcaacctcaacaaagaatcataaaagaaagta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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|
| T |
54681258 |
ttttcttacattgtaccaatatggatcaagaaaaatatcatccactaaaatcaaatatcatttgatgagcaacctcagcaaagaatcataaaaggaagta |
54681357 |
T |
|
| Q |
218 |
acgagaataccttataaattttaa |
241 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
54681358 |
acaagaataccttataaattttaa |
54681381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 52310755 - 52310796
Alignment:
| Q |
169 |
caaatatcatttgatgagcaacctcaacaaagaatcataaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
52310755 |
caaatatcatttgatgagcaacctcaacaaagcatcataaaa |
52310796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 4e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 19909477 - 19909246
Alignment:
| Q |
14 |
aatattatagtacgaaatttccacatactaaaccaatattatagaggtttgaaggattcaatcaaactgtttagcatgagaataatatgaacgaagaatg |
113 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||| |||| |
|
|
| T |
19909477 |
aatattatagtacaaaatttccacatactaaaccaatattatagaggtttgaaagattcaatcaaactgtttagcatgagtatagtatgaacgaataatg |
19909378 |
T |
|
| Q |
114 |
aaaattttcttacattgtac---caatatggatcaagaaaaatatcatccactaaaatc-aaatatcatttgatgagcaacctcaacaaagaatcataaa |
209 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19909377 |
aaaattttcttacattgtactaacatgatggatcaagaaaaatatcttccactaaaaccaaaatatcatttgatgagcaacctcaacaaagaatcataac |
19909278 |
T |
|
| Q |
210 |
agaaagtaacgagaataccttataaattttaa |
241 |
Q |
| |
|
|| |||||||||| |||||||||||||||||| |
|
|
| T |
19909277 |
aggaagtaacgaggataccttataaattttaa |
19909246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 84 - 235
Target Start/End: Complemental strand, 10734923 - 10734772
Alignment:
| Q |
84 |
ttagcatgagaataatatgaacgaagaatgaaaattttcttacattgtaccaatatggatcaagaaaaatatcatccactaaaatcaaatatcatttgat |
183 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
10734923 |
ttagcatgaacatagtatgaacgaagaatgaaaattttcttacattatactaatatggatcaagaaaaataccatccactaaaatcaaatatcatttgat |
10734824 |
T |
|
| Q |
184 |
gagcaacctcaacaaagaatcataaaagaaagtaacgagaataccttataaa |
235 |
Q |
| |
|
||||||||||||||||| | |||||||| |||||| |||||||||||||||| |
|
|
| T |
10734823 |
gagcaacctcaacaaagcaccataaaaggaagtaaagagaataccttataaa |
10734772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 54 - 199
Target Start/End: Complemental strand, 15007962 - 15007816
Alignment:
| Q |
54 |
atagaggtttgaaggat-tcaatcaaactgtttagcatgagaataatatgaacgaagaatgaaaattttcttacattgtaccaatatggatcaagaaaaa |
152 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||| ||| ||| || ||||||||||||||||||||| ||| || |||||||||||||||||| |
|
|
| T |
15007962 |
atagaggtttgaaggagatcaatcaaacaatttagcatgaatatattataaatgaagaatgaaaattttcttacgttgaactaatatggatcaagaaaaa |
15007863 |
T |
|
| Q |
153 |
tatcatccactaaaatcaaatatcatttgatgagcaacctcaacaaa |
199 |
Q |
| |
|
||||| |||||||||||||||||||||| |||| ||| ||||||||| |
|
|
| T |
15007862 |
tatcaaccactaaaatcaaatatcatttaatgaacaatctcaacaaa |
15007816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 54 - 225
Target Start/End: Complemental strand, 40787572 - 40787399
Alignment:
| Q |
54 |
atagaggtttgaaggat-tcaatcaaactgtttagcatgagaataatatgaacgaa-gaatgaaaattttcttacattgtaccaatatggatcaagaaaa |
151 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||| ||| |||||| ||| |||||||||||||||||| ||| || ||||||||||||||||| |
|
|
| T |
40787572 |
atagaggtttgaaggagatcaatcaaacaatttagcatgaatatattatgaatgaaagaatgaaaattttcttacgttgaactaatatggatcaagaaaa |
40787473 |
T |
|
| Q |
152 |
atatcatccactaaaatcaaatatcatttgatgagcaacctcaacaaagaatcataaaagaaagtaacgagaat |
225 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||| || ||||||||| |||||| |||||| |
|
|
| T |
40787472 |
atatcaaccactaaaatcaaatatcatttgatgagcaatctcaactaaatatcataaaaagaagtaatgagaat |
40787399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 54 - 225
Target Start/End: Complemental strand, 21143439 - 21143267
Alignment:
| Q |
54 |
atagaggtttgaaggat-tcaatcaaactgtttagcatgagaataatatgaacgaagaatgaaaattttcttacattgtaccaatatggatcaagaaaaa |
152 |
Q |
| |
|
|||||||||||||||| |||||| |||| |||| ||||| ||| |||||| |||||||||| |||||||| | ||| || ||||||||||| |||||| |
|
|
| T |
21143439 |
atagaggtttgaaggagatcaatctaactatttaccatgaatatattatgaatgaagaatgaatattttcttgcgttgaactaatatggatcacgaaaaa |
21143340 |
T |
|
| Q |
153 |
tatcatccactaaaatcaaatatcatttgatgagcaacctcaacaaagaatcataaaagaaagtaacgagaat |
225 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||| |
|
|
| T |
21143339 |
tatcatccactaaaaccaaatatcatttgatgagcaatctcaacaaaacatcataaaaagaagtaacgagaat |
21143267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 17188759 - 17188646
Alignment:
| Q |
99 |
tatgaacgaagaatgaaaattttcttacattgtaccaatatggatcaagaaaaatatcatccactaaaatcaaatatcatttgatgagcaacctcaacaa |
198 |
Q |
| |
|
|||||| |||||||||| | |||||||| ||| || ||||||||||||||||| |||||||||| |||| |||| ||||||||| || ||||||||||| |
|
|
| T |
17188759 |
tatgaatgaagaatgaacaatttcttacgttgaactaatatggatcaagaaaactatcatccaccaaaacaaaatctcatttgataag-aacctcaacaa |
17188661 |
T |
|
| Q |
199 |
agaatcataaaagaa |
213 |
Q |
| |
|
|| || ||||||||| |
|
|
| T |
17188660 |
agcattataaaagaa |
17188646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 100 - 189
Target Start/End: Original strand, 43852617 - 43852706
Alignment:
| Q |
100 |
atgaacgaagaatgaaaattttcttacattgtaccaatatggatcaagaaaaatatcatccactaaaatcaaatatcatttgatgagcaa |
189 |
Q |
| |
|
||||| ||| |||||| | |||||||| ||| || |||||||| | ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43852617 |
atgaatgaaaaatgaacagtttcttacgttgaactgatatggattacgaaaaatatcatccactaaaaccaaatatcatttgatgagcaa |
43852706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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