View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17654_low_10 (Length: 303)
Name: NF17654_low_10
Description: NF17654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17654_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 11021640 - 11021515
Alignment:
| Q |
1 |
acctttattcacttcatttcactctctttttagctttcttaatatggtatcagaagtcttctcttgagagaaggttgttacgattcagttacgcttctct |
100 |
Q |
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| T |
11021640 |
acctttattcacttcatttcactctctttttagctttcttaatatggtatcagaagtcttctcttgagagaaggttgttacgattcagttacgcttctct |
11021541 |
T |
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| Q |
101 |
tccgccatggatgcgtacatcccaag |
126 |
Q |
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| T |
11021540 |
tccgccatggatgcgtacatctcaag |
11021515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 185 - 289
Target Start/End: Complemental strand, 11021456 - 11021352
Alignment:
| Q |
185 |
tcgttgattcctgaaacttcatctannnnnnnccttgtttttctacaacaatggtgcgtaacaatggaaatgccaacaataatgcagttcaagatccaac |
284 |
Q |
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| T |
11021456 |
tcgttgattcctgaaacttcatctatttttttccttgtttttttacaacaatggtgcgtaacaatggaaatgccaacaataatggagttcaagatccaac |
11021357 |
T |
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| Q |
285 |
acagg |
289 |
Q |
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||||| |
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| T |
11021356 |
acagg |
11021352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 13887954 - 13888035
Alignment:
| Q |
35 |
tttcttaatatggtatcagaagtcttctcttgagagaaggttgttacgattcagttacgcttctcttccgccatggatgcgt |
116 |
Q |
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| T |
13887954 |
tttcttattatggtatcagaagccttctctttggagaaggtggttacgattaagttacgcatcatttccgcaatggatgcgt |
13888035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 15095012 - 15095082
Alignment:
| Q |
46 |
ggtatcagaagtcttctcttgagagaaggttgttacgattcagttacgcttctcttccgccatggatgcgt |
116 |
Q |
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| T |
15095012 |
ggtatccgaagccttctcttggtagaaggtggtcacgattcagttacgcatcatttccgcaatggatgcgt |
15095082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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