View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17654_low_13 (Length: 250)
Name: NF17654_low_13
Description: NF17654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17654_low_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 2174367 - 2174604
Alignment:
| Q |
13 |
aatataacattctattataagtgaaacagtgataaacatgaatccaagtaattttggtctctaaatatttgaaacaatctcattctagccatgcatattt |
112 |
Q |
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| T |
2174367 |
aatataacattctattaaaagtgaaacagtgataaacatgaatccaagtaattttggtctctaaatatttgaaacaatctcattctagccatgcatattt |
2174466 |
T |
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| Q |
113 |
caaaatcatcaaaatgtttgagtgtatcttctatttccaattttataaataatggacaatcagaagatgtatcataaaaagcacattcgagaactaataa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2174467 |
caaaatcatcaaaatgtttgagtgtatcttctatttccaattttataaataatggacaatcagaagatgtatcataaaaagcacattcgagaactaataa |
2174566 |
T |
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| Q |
213 |
ctaactaacggaaaacacattcagaaatggttttagaa |
250 |
Q |
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|||||| ||||||||||||||||||||| ||||||||| |
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| T |
2174567 |
ctaacttacggaaaacacattcagaaatagttttagaa |
2174604 |
T |
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