View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17654_low_16 (Length: 235)
Name: NF17654_low_16
Description: NF17654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17654_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 2174789 - 2174876
Alignment:
| Q |
17 |
caaaggtccatttccatcacaattt-gttcaattattacaaaagcaatagctaatgtatgtttttagggcatgttatgaaacaaattg |
103 |
Q |
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| T |
2174789 |
caaaggtccatttccatcacaattttgttcaattattacaaaagcaatagctaatgtatgtttttagggcatgttatgaaacaaattg |
2174876 |
T |
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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 2174941 - 2174986
Alignment:
| Q |
168 |
attctttaacaagtttctcaaaagcatgtgttagcaaaacccttag |
213 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2174941 |
attctttaaccagtttctcaaaagcatgtgttagcaaaacccttag |
2174986 |
T |
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