View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17654_low_2 (Length: 563)
Name: NF17654_low_2
Description: NF17654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17654_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 10 - 545
Target Start/End: Complemental strand, 4400766 - 4400229
Alignment:
| Q |
10 |
attattcttccctaattgagacattgatcaacaagatagactgtgagtttacatttaaaaaactatgatctttggattattttattggagttgacattaa |
109 |
Q |
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| T |
4400766 |
attattcttccctaattgagacattgatcaacaagatagactgtgagtttacatttaaaaaactatgatctttggattattttattggagttgacattaa |
4400667 |
T |
|
| Q |
110 |
gcaaattcttaattgggcaatagtgcaacacagtatgctactctgacttgtcctataatttcctggagtgtcggtcaatgaagtatgccagtttctttct |
209 |
Q |
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| T |
4400666 |
gcaaattcttaattgggcaatagtgcaacacagtatgctactctgacttgtcctataatttcctggagtgtcggtcaatgaagtatgccagtttctttct |
4400567 |
T |
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| Q |
210 |
ccaagacttgaaccgcattagacagacaagtgaaggagacaaatactgaaatttgaatttttagaacatcaataacatatacatggttgtcatgtaggag |
309 |
Q |
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| T |
4400566 |
ccaagacttgaaccgcattagacagacaagtgaaggagacaaatactgaaatttgaatttttagaacatcaataacatatacatggttgtcatgtaggag |
4400467 |
T |
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| Q |
310 |
taattggtcacatagtcctcacatattgtcacgtgattaacagtaaaaagaccaattccatgatgttaaatttgaggaactaaaatttaaacttaaaagg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4400466 |
taattggtcacatagtcctcacatattgtcacgtgattaacagtaaaaagaccaattccatgatgttaaatttgaggaactaaaatttaaacttaaaagg |
4400367 |
T |
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| Q |
410 |
aatttctttgttgaatgaaaaatgttacttgtatgtcagtaaacgttatattgacatttttctcttttgctaggttttcaagccctacacttttatatcc |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4400366 |
aatttctttgttgaatgaaaaatgttacttgtatgtcagtaaacgttatattgacatttttctcttttgctaggttttcaagccctaaacttttatatcc |
4400267 |
T |
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| Q |
510 |
--ttaactaatttcattcaacaaactagttggagttga |
545 |
Q |
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| T |
4400266 |
cttaaactaatttcattcaacaaactagttggagttga |
4400229 |
T |
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