View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17654_low_4 (Length: 509)
Name: NF17654_low_4
Description: NF17654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17654_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Original strand, 4273897 - 4274382
Alignment:
| Q |
1 |
tcatcaaggtcaacctagcacccgaaaatgtgacactttaatatgtagatactcaaaagcaaggtaaatagtttataacttacattcataatcataacta |
100 |
Q |
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| T |
4273897 |
tcatcagggtcaacctagcaccagaaaatgtgacactttaatatgtagatactcaaaagcaaggtaaatagtttataacttacattcataatcataacta |
4273996 |
T |
|
| Q |
101 |
caaacataaagcatgagaatggtagtcttgatgacaatcaaaagaactgtgctggataataccgatgatgaaacatgcatgatgaagttaaacttacaaa |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4273997 |
caaacataaagcatgagaatggcagtcttgatgacaatcaaaagaactgtgctggataataccgatgatgaaacatgcatgatgaagttaaacttacaaa |
4274096 |
T |
|
| Q |
201 |
ctgcttttacaaatacaaatttatgactcagacaatataattgtaaaatttaaaatctgctccaatcatagaaaaccattctcaagttcagctcataccc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4274097 |
ctgcttttacaaatacaaatttatgactcagacaatataattgtaaaatttaaaatctgctccaatcatagaaaaccattctcaagttcagctcataccc |
4274196 |
T |
|
| Q |
301 |
tgcagcactctttgttgctaaaaaatttggacaagctacattttattcatatattctgagaaacagttaatgaataggataaaatgcagcatgtgtctca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4274197 |
tgcagcactctttgttgctaaaaaatttggacaagctacattttattcatatattctgagaaacagttaatgaataggataaaatgcagcatgtgtctca |
4274296 |
T |
|
| Q |
401 |
cgtttggaattaaaggattggaacacgccaggaaaaatttaaagattgtttagtttaagaaaaacaaattcggattaacatttagg |
486 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4274297 |
tgtttggaattaaaggattggaacacgcaaggaaaaatttaaagattgtttagtttaagaaaaacaaattcggattaacatttagg |
4274382 |
T |
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