View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17654_low_5 (Length: 459)

Name: NF17654_low_5
Description: NF17654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17654_low_5
NF17654_low_5
[»] chr4 (10 HSPs)
chr4 (111-445)||(6628089-6628426)
chr4 (13-84)||(6628446-6628517)
chr4 (179-228)||(21052575-21052624)
chr4 (186-228)||(7291646-7291688)
chr4 (179-228)||(6087741-6087790)
chr4 (179-228)||(12671766-12671815)
chr4 (179-255)||(24664981-24665058)
chr4 (171-228)||(52270048-52270105)
chr4 (179-228)||(53142600-53142649)
chr4 (406-442)||(6594388-6594424)
[»] chr8 (5 HSPs)
chr8 (179-235)||(37938489-37938545)
chr8 (179-228)||(11621169-11621218)
chr8 (179-228)||(13286125-13286174)
chr8 (179-228)||(33451367-33451416)
chr8 (180-228)||(8717493-8717541)
[»] chr5 (6 HSPs)
chr5 (183-225)||(5591258-5591300)
chr5 (171-254)||(5107236-5107320)
chr5 (179-231)||(19248473-19248525)
chr5 (182-228)||(27903110-27903156)
chr5 (179-224)||(11156831-11156876)
chr5 (179-228)||(18489094-18489143)
[»] chr3 (10 HSPs)
chr3 (179-233)||(43345020-43345074)
chr3 (183-235)||(46298066-46298118)
chr3 (179-222)||(28808171-28808214)
chr3 (178-228)||(29394164-29394214)
chr3 (179-228)||(7824801-7824850)
chr3 (182-235)||(10843792-10843845)
chr3 (180-225)||(34334071-34334116)
chr3 (180-225)||(39498353-39498398)
chr3 (177-222)||(53429147-53429192)
chr3 (180-232)||(37921012-37921064)
[»] chr2 (6 HSPs)
chr2 (179-228)||(9686451-9686500)
chr2 (179-228)||(2783001-2783050)
chr2 (179-228)||(7029409-7029458)
chr2 (178-255)||(7201500-7201577)
chr2 (179-228)||(22523030-22523079)
chr2 (179-235)||(7206119-7206175)
[»] chr1 (9 HSPs)
chr1 (180-228)||(24695554-24695602)
chr1 (179-231)||(52043267-52043319)
chr1 (179-234)||(25532967-25533022)
chr1 (179-234)||(52441523-52441578)
chr1 (178-228)||(29233992-29234042)
chr1 (183-228)||(24978242-24978287)
chr1 (179-228)||(49183167-49183216)
chr1 (178-234)||(18166595-18166651)
chr1 (179-231)||(30279635-30279687)
[»] chr7 (10 HSPs)
chr7 (179-234)||(40752851-40752906)
chr7 (182-228)||(34382954-34383000)
chr7 (186-228)||(45237397-45237439)
chr7 (179-228)||(5584641-5584690)
chr7 (179-228)||(5589601-5589650)
chr7 (179-228)||(8683064-8683113)
chr7 (183-228)||(30463967-30464012)
chr7 (179-243)||(5352323-5352387)
chr7 (179-255)||(10244721-10244797)
chr7 (176-228)||(39706611-39706663)
[»] chr6 (5 HSPs)
chr6 (179-234)||(9111041-9111096)
chr6 (182-244)||(1918460-1918522)
chr6 (179-225)||(30370171-30370217)
chr6 (179-228)||(8810634-8810683)
chr6 (177-225)||(9311951-9311999)
[»] scaffold0896 (1 HSPs)
scaffold0896 (179-228)||(3135-3184)


Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 111 - 445
Target Start/End: Complemental strand, 6628426 - 6628089
Alignment:
Q  111 aactctattaaactattaagttggtggtctctatattttaacccttgctattaatttaagttattaacgtcctcgtgagtttagttcagttggtatatat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6628426 aactctattaaactattaagttggtggtctctatattttaacccttgctattaatttaagttattaacgtcctcgtgagtttagttcagttggtatatat 6628327  T
Q  211 aatacataatatatgcaatgtccgacattcgaacccgaccaccacnnnnnnn---taaagtcattaacaaacattaatctataggagagccttcagcctt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||    
T  6628326 aatacataatatatgcaatgtccgacattcgaacccgaccaccacaaaaaaaaaataaagtcattaacaaacattaatctataggagagccttcagcctt 6628227  T
Q  308 ctaaatggttggtggtttagttaataattgatcacataataaagcaagcaggactttgttgttcatattcagataaacctggacttgctattgaaagagt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6628226 ctaaatggttggtggtttagttaataattgatcacataataaagcaagcaggactttgttgttcatattcagataaacctggacttgctattgaaagagt 6628127  T
Q  408 ttttcttcatcatttcatttcagttgatttcttcttat 445  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6628126 ttttcttcatcatttcatttcagttgatttcttcttat 6628089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 6628517 - 6628446
Alignment:
Q  13 aatatctggtaagccacaatactctaaatttgttgaacaggtcattgaaattatgtatattttaatttaaat 84  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6628517 aatatctggtaagccacaatactctaaatttgtagaacaggtcattgaaattatgtatattttaatttaaat 6628446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 21052624 - 21052575
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||||    
T  21052624 gtcctcgtgagtttagctcagttggtatggataatacataatatatgcaa 21052575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 7291688 - 7291646
Alignment:
Q  186 tgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    |||||||||||||||||||||| |||||  |||||||||||||    
T  7291688 tgagtttagttcagttggtataaataatctataatatatgcaa 7291646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 6087741 - 6087790
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    ||||| ||||| |||| |||||||||||| ||||| ||||||||||||||    
T  6087741 gtccttgtgagcttagctcagttggtatagataatgcataatatatgcaa 6087790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 12671815 - 12671766
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    |||||||||||||||| |||||||||||| | ||| ||||| ||||||||    
T  12671815 gtcctcgtgagtttagctcagttggtatagacaatgcataaaatatgcaa 12671766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 24665058 - 24664981
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaatgtccgacattcgaa-cccgaccaccac 255  Q
    ||||||||||| |||| |||||||||||  | ||| |||||||||||||| |||||   |||||| ||||||||||||    
T  24665058 gtcctcgtgagcttagctcagttggtatggagaatgcataatatatgcaaggtccggggttcgaaccccgaccaccac 24664981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 52270105 - 52270048
Alignment:
Q  171 ttattaacgtcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    ||||||| ||||||||||| |||| |||||||||||  | ||| ||||||||||||||    
T  52270105 ttattaatgtcctcgtgagcttagctcagttggtatggacaatgcataatatatgcaa 52270048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 53142600 - 53142649
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    |||||| |||| |||||||||||| |||| ||||| ||||||||||||||    
T  53142600 gtcctcatgagcttagttcagttgctatagataatgcataatatatgcaa 53142649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 442
Target Start/End: Complemental strand, 6594424 - 6594388
Alignment:
Q  406 gtttttcttcatcatttcatttcagttgatttcttct 442  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  6594424 gttttgcttcatcatttcgtttcagttgatttcttct 6594388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 37938489 - 37938545
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaatgtccga 235  Q
    |||||||||||||||| |||||||||||  ||||| |||||||||||||| ||||||    
T  37938489 gtcctcgtgagtttagctcagttggtatggataatgcataatatatgcaaagtccga 37938545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 11621169 - 11621218
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    ||||||||||| |||||| |||||||| | | ||||||||||||||||||    
T  11621169 gtcctcgtgagcttagttaagttggtagagaaaatacataatatatgcaa 11621218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 13286125 - 13286174
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    ||||||||||| |||| |||||||||||| | ||| ||||||||||||||    
T  13286125 gtcctcgtgagcttagctcagttggtatagacaatgcataatatatgcaa 13286174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 33451416 - 33451367
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    ||||||||||| |||| |||||||||||  ||||| ||||||||||||||    
T  33451416 gtcctcgtgagcttagctcagttggtatggataatgcataatatatgcaa 33451367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 8717541 - 8717493
Alignment:
Q  180 tcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    ||||||||||||||| |||||||||||  | ||| ||||||||||||||    
T  8717541 tcctcgtgagtttagctcagttggtatggacaatgcataatatatgcaa 8717493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 5591258 - 5591300
Alignment:
Q  183 tcgtgagtttagttcagttggtatatataatacataatatatg 225  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  5591258 tcgtgagtttagttcagttggtagagataatacataatatatg 5591300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 5107320 - 5107236
Alignment:
Q  171 ttattaacgtcctcgtgagtttagttcagttggtatatataatacataatatatgcaatgtccgacattcgaa-cccgaccacca 254  Q
    ||||||| | ||||||||| |||  |||||||||||  ||||| |||||||||||||| ||||||  |||||| |||||||||||    
T  5107320 ttattaatgccctcgtgagcttaactcagttggtatgaataatgcataatatatgcaaggtccgaggttcgaaccccgaccacca 5107236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 19248473 - 19248525
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaatgt 231  Q
    ||||||||||| |||| |||||||||||| | ||| |||||||||||||||||    
T  19248473 gtcctcgtgagcttagctcagttggtatagacaatgcataatatatgcaatgt 19248525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 27903110 - 27903156
Alignment:
Q  182 ctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    |||||||||||||||||||||||||  | ||| ||||||||||||||    
T  27903110 ctcgtgagtttagttcagttggtatgaacaatgcataatatatgcaa 27903156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 11156831 - 11156876
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatat 224  Q
    ||||||||||| |||||||||||| |||  ||||||||||||||||    
T  11156831 gtcctcgtgagcttagttcagttgttatggataatacataatatat 11156876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 18489143 - 18489094
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    ||||| |||||||||| |||||||||||| | ||| ||||||||||||||    
T  18489143 gtccttgtgagtttagctcagttggtatagacaatgcataatatatgcaa 18489094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 43345074 - 43345020
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaatgtcc 233  Q
    |||||||||||||||| |||||||||||  | |||||||||||||||||| ||||    
T  43345074 gtcctcgtgagtttagctcagttggtatgaacaatacataatatatgcaaggtcc 43345020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 46298118 - 46298066
Alignment:
Q  183 tcgtgagtttagttcagttggtatatataatacataatatatgcaatgtccga 235  Q
    |||||||||||| ||||||||| |  ||||| |||||||||||||||||||||    
T  46298118 tcgtgagtttagctcagttggtttggataatgcataatatatgcaatgtccga 46298066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 28808214 - 28808171
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatat 222  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||||    
T  28808214 gtcctcgtgagcttaattcagttggtatagataatacataatat 28808171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 29394164 - 29394214
Alignment:
Q  178 cgtcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  29394164 cgtcctcgtgagtttagttcagtttgtaagagtaatacataatatatgcaa 29394214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 7824801 - 7824850
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    |||||||||||||||  ||||||| |||| | ||||||||||||||||||    
T  7824801 gtcctcgtgagtttaactcagttgatatagacaatacataatatatgcaa 7824850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 10843845 - 10843792
Alignment:
Q  182 ctcgtgagtttagttcagttggtatatataatacataatatatgcaatgtccga 235  Q
    |||||||| |||  |||||||||||  |||||||||||||||||||| ||||||    
T  10843845 ctcgtgagcttaactcagttggtatgaataatacataatatatgcaaggtccga 10843792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 34334071 - 34334116
Alignment:
Q  180 tcctcgtgagtttagttcagttggtatatataatacataatatatg 225  Q
    ||||||||||||||| | ||||| |||| |||||||||||||||||    
T  34334071 tcctcgtgagtttagcttagttgatatagataatacataatatatg 34334116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 39498353 - 39498398
Alignment:
Q  180 tcctcgtgagtttagttcagttggtatatataatacataatatatg 225  Q
    ||||||||||| |||||||||||| ||| ||||||||||| |||||    
T  39498353 tcctcgtgagtgtagttcagttggcatagataatacataaaatatg 39498398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 53429147 - 53429192
Alignment:
Q  177 acgtcctcgtgagtttagttcagttggtatatataatacataatat 222  Q
    |||||||||||||||||| |||||||||||| | ||| ||||||||    
T  53429147 acgtcctcgtgagtttagctcagttggtatagacaatgcataatat 53429192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 37921064 - 37921012
Alignment:
Q  180 tcctcgtgagtttagttcagttggtatatataatacataatatatgcaatgtc 232  Q
    ||||||||||||||| ||||||| ||   ||||| ||||||||||||||||||    
T  37921064 tcctcgtgagtttagctcagttgatagggataatgcataatatatgcaatgtc 37921012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 9686451 - 9686500
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    |||||||||| ||||| |||||||||||| | ||||||||||||||||||    
T  9686451 gtcctcgtgaatttagctcagttggtatagacaatacataatatatgcaa 9686500  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 2783001 - 2783050
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    ||||||||||| ||||||||||||||| | |||||  |||||||||||||    
T  2783001 gtcctcgtgagcttagttcagttggtagagataatgtataatatatgcaa 2783050  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 7029458 - 7029409
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    ||||||||||| |||| |||||||||| | | ||||||||||||||||||    
T  7029458 gtcctcgtgagattagctcagttggtaaaaacaatacataatatatgcaa 7029409  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 7201500 - 7201577
Alignment:
Q  178 cgtcctcgtgagtttagttcagttggtatatataatacataatatatgcaatgtccgacattcgaacccgaccaccac 255  Q
    |||||||||||| |||| ||||||||| |  | ||| |||||||||||||| ||| |   ||||||||||||||||||    
T  7201500 cgtcctcgtgagcttagctcagttggtttgaacaatgcataatatatgcaaagtctggagttcgaacccgaccaccac 7201577  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 22523079 - 22523030
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    ||||||||||| |||| |||||||||||  | ||||||||||||||||||    
T  22523079 gtcctcgtgagcttagctcagttggtatggacaatacataatatatgcaa 22523030  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 7206119 - 7206175
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaatgtccga 235  Q
    ||||||||||| |||| |||||||||| | | ||| |||||||||||||| ||||||    
T  7206119 gtcctcgtgagcttagctcagttggtagagacaatgcataatatatgcaaggtccga 7206175  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 24695554 - 24695602
Alignment:
Q  180 tcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    ||||||||||||||| |||||||||||  | ||||||||||||||||||    
T  24695554 tcctcgtgagtttagctcagttggtatgaacaatacataatatatgcaa 24695602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 52043267 - 52043319
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaatgt 231  Q
    |||||||||||||||| |||||||||||  ||||| ||||| |||||||||||    
T  52043267 gtcctcgtgagtttagctcagttggtatggataatgcataaaatatgcaatgt 52043319  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 25532967 - 25533022
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaatgtccg 234  Q
    ||||||||||| ||||||||||||||||  | ||| |||||||||||||| |||||    
T  25532967 gtcctcgtgagcttagttcagttggtatggacaatgcataatatatgcaaggtccg 25533022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 52441578 - 52441523
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaatgtccg 234  Q
    ||||||||||| |||| |||||||||||| | ||| |||||||||||||| |||||    
T  52441578 gtcctcgtgagcttagctcagttggtatagacaatgcataatatatgcaaggtccg 52441523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 29234042 - 29233992
Alignment:
Q  178 cgtcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    ||||||||||||||||| |||||||||||| | ||| ||||| ||||||||    
T  29234042 cgtcctcgtgagtttagctcagttggtatagacaatgcataaaatatgcaa 29233992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 24978242 - 24978287
Alignment:
Q  183 tcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    ||||||| |||  |||||||||||| ||||||||||||||||||||    
T  24978242 tcgtgagcttaactcagttggtatagataatacataatatatgcaa 24978287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 49183167 - 49183216
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    |||||||||||||||| ||||||||||   | ||||||||||||||||||    
T  49183167 gtcctcgtgagtttagctcagttggtaaggacaatacataatatatgcaa 49183216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 18166595 - 18166651
Alignment:
Q  178 cgtcctcgtgagtttagttcagttggtatatataatacataatatatgcaatgtccg 234  Q
    |||||||||| | |||| |||||||||||| | ||| |||||||||||||| |||||    
T  18166595 cgtcctcgtgggcttagctcagttggtatagacaatgcataatatatgcaaagtccg 18166651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 30279687 - 30279635
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaatgt 231  Q
    ||||||||||| |||| ||||||| ||  || |||||||||||||||||||||    
T  30279687 gtcctcgtgagcttagctcagttgataggtacaatacataatatatgcaatgt 30279635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 40752906 - 40752851
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaatgtccg 234  Q
    ||||||||||| |||| |||||| ||||  | ||||||||||||||||||||||||    
T  40752906 gtcctcgtgagcttagctcagttagtatggacaatacataatatatgcaatgtccg 40752851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 34383000 - 34382954
Alignment:
Q  182 ctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    ||||||||||||  |||||||||||  ||||||||||||||||||||    
T  34383000 ctcgtgagtttatatcagttggtatgaataatacataatatatgcaa 34382954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 45237439 - 45237397
Alignment:
Q  186 tgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    |||||||||||||| ||||||  ||||||||||||||||||||    
T  45237439 tgagtttagttcaggtggtatggataatacataatatatgcaa 45237397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 5584641 - 5584690
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    ||||||||||| |||| ||| |||||| | ||||||||||||||||||||    
T  5584641 gtcctcgtgagcttagctcaattggtaaagataatacataatatatgcaa 5584690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 5589601 - 5589650
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    ||||||||||| |||| ||| |||||| | ||||||||||||||||||||    
T  5589601 gtcctcgtgagcttagctcaattggtaaagataatacataatatatgcaa 5589650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 8683064 - 8683113
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    ||||||||||| |||| |||||||||||| | ||| ||||||||||||||    
T  8683064 gtcctcgtgagcttagctcagttggtatagacaatgcataatatatgcaa 8683113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 30464012 - 30463967
Alignment:
Q  183 tcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    |||||||||||| |||||| ||||| ||||| ||||||||||||||    
T  30464012 tcgtgagtttagctcagttagtatagataatgcataatatatgcaa 30463967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 5352323 - 5352387
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaatgtccgacattcgaa 243  Q
    ||||||||||| |||| ||||||||||   | |||||||||||||| ||| |||||| |||||||    
T  5352323 gtcctcgtgagcttagctcagttggtaaggacaatacataatatatacaaggtccgagattcgaa 5352387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 10244721 - 10244797
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaatgtccgacattcgaacccgaccaccac 255  Q
    ||||||||||| |||| |||||||||||  | ||| |||||||||||||| |||||   ||| |||||| |||||||    
T  10244721 gtcctcgtgagcttagctcagttggtatggacaatgcataatatatgcaaggtccggggttcaaacccggccaccac 10244797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 39706611 - 39706663
Alignment:
Q  176 aacgtcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    |||||||||||||| |||  ||| |||||||| | ||||||||||||||||||    
T  39706611 aacgtcctcgtgagattaactcaattggtataaacaatacataatatatgcaa 39706663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 9111041 - 9111096
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaatgtccg 234  Q
    ||||||||||| ||||||||||||||||  | ||| |||||||||||||| |||||    
T  9111041 gtcctcgtgagcttagttcagttggtatgaacaatgcataatatatgcaaggtccg 9111096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 1918522 - 1918460
Alignment:
Q  182 ctcgtgagtttagttcagttggtatatataatacataatatatgcaatgtccgacattcgaac 244  Q
    ||||||||||||  |||||||||||| | ||| |||||||||||||| ||||||  |||||||    
T  1918522 ctcgtgagtttaactcagttggtatagacaatgcataatatatgcaaggtccgaggttcgaac 1918460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 30370217 - 30370171
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatg 225  Q
    ||||||||||| ||||||||||||||| | ||||| |||||||||||    
T  30370217 gtcctcgtgagcttagttcagttggtaaagataatgcataatatatg 30370171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 8810634 - 8810683
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    ||||||||||| |||| |||||||||| | | ||||||||||||||||||    
T  8810634 gtcctcgtgagcttagctcagttggtaaagacaatacataatatatgcaa 8810683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 9311999 - 9311951
Alignment:
Q  177 acgtcctcgtgagtttagttcagttggtatatataatacataatatatg 225  Q
    ||||||||||||| |||  |||||||||||  |||||||||||||||||    
T  9311999 acgtcctcgtgagcttaactcagttggtatgaataatacataatatatg 9311951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 3135 - 3184
Alignment:
Q  179 gtcctcgtgagtttagttcagttggtatatataatacataatatatgcaa 228  Q
    ||||||||||| |||| |||||||||| | | ||||||||||||||||||    
T  3135 gtcctcgtgagcttagctcagttggtaaagacaatacataatatatgcaa 3184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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