View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17654_low_6 (Length: 448)
Name: NF17654_low_6
Description: NF17654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17654_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 305 - 428
Target Start/End: Complemental strand, 18474799 - 18474676
Alignment:
| Q |
305 |
ggcaaacaatatcccttaatttttaggtttatgtcatttgcatgaggctgaaatgctaaggtccattttatgtcttatctgacgaagaaatagaagaaac |
404 |
Q |
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| T |
18474799 |
ggcaaacaatatcccttaatttttaggtttatgtcatttgcatgaggctgaaatgctaaggtccattttatgccttatctgacgaagaaatagaagaaac |
18474700 |
T |
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| Q |
405 |
aactctccaaatcctacaacactc |
428 |
Q |
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| T |
18474699 |
aactctccaaatcctacaacactc |
18474676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 18475093 - 18474968
Alignment:
| Q |
10 |
attattcttattttatccttattaactcaactctttttcaattttaaatgtaaattgaaacctacaccataactatacaatatttaaaaatgaactatct |
109 |
Q |
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| T |
18475093 |
attattcttattttatccttattaactcaactctttttcaattttaaatgtaaattgaaacctacaccataattatacaatatttaaaaatgaactatct |
18474994 |
T |
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| Q |
110 |
attttaattgaacttcttttgttatg |
135 |
Q |
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| T |
18474993 |
attttaattgaagttcttttgttatg |
18474968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 18474880 - 18474830
Alignment:
| Q |
224 |
ccaatgaagtacaatagaaaaagagcggaacgtgctcgtgtgtatgttagt |
274 |
Q |
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| T |
18474880 |
ccaatgaagtacaatagaaaaagagcggaacgtgctcgtgtgtatgttagt |
18474830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 27052265 - 27052190
Alignment:
| Q |
11 |
ttattcttattttatccttattaactcaactctttttcaattttaaatgtaaattgaaacctacaccataactata |
86 |
Q |
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| T |
27052265 |
ttattcttattttatccttatcaactcaacttctttttaattttaaatttaaattcaaatctacaccataattata |
27052190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 15485939 - 15486036
Alignment:
| Q |
27 |
cttattaactcaactctttttcaattttaaatgtaaattgaaacctacaccataactatacaatatttaaaaatgaactatctattttaattgaactt |
124 |
Q |
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| T |
15485939 |
cttatcaactcaactctttgacaattttaaatttaaattaaaatctacaccataattttagagaatttaaaaactaattacctattttaattgaactt |
15486036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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