View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17654_low_9 (Length: 316)
Name: NF17654_low_9
Description: NF17654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17654_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 31722035 - 31721749
Alignment:
| Q |
15 |
catagggatgagaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaaaagtcaag |
114 |
Q |
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|||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31722035 |
cataaggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaaaagtcaag |
31721936 |
T |
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| Q |
115 |
aatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggattccaaaggctcgtc |
214 |
Q |
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| T |
31721935 |
aatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggattccaaaggctcgtc |
31721836 |
T |
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| Q |
215 |
aagtgtctaattctaaagtttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgcatcacatg |
301 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31721835 |
aagtgtctaattctaaaggttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgcttcacatg |
31721749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 31711329 - 31711043
Alignment:
| Q |
15 |
catagggatgagaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaaaagtcaag |
114 |
Q |
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|||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31711329 |
cataaggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaaaagtcaag |
31711230 |
T |
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| Q |
115 |
aatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggattccaaaggctcgtc |
214 |
Q |
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| T |
31711229 |
aatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggcctttaatactgataacaagtttggtatgaaacggattccaaaggctcgtc |
31711130 |
T |
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| Q |
215 |
aagtgtctaattctaaagtttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgcatcacatg |
301 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
31711129 |
aagtgtctaattctaaaggttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggtggcttcacatg |
31711043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 301
Target Start/End: Complemental strand, 31719425 - 31719150
Alignment:
| Q |
20 |
ggatgagaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaaaagtcaagaatac |
119 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31719425 |
ggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaaaagtcaagaatac |
31719326 |
T |
|
| Q |
120 |
gtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggattccaaaggctcgtcaagtg |
219 |
Q |
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| T |
31719325 |
gtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggattccaaaggctcgtcaagtg |
31719226 |
T |
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| Q |
220 |
tctaattctaaagtttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgcatcacatg |
301 |
Q |
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| T |
31719225 |
t------ctaaaggttattctggtgatgcgtttgaggctaggcttatatttgagatttctaagaccttggtggcttcacatg |
31719150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 31716484 - 31716217
Alignment:
| Q |
15 |
catagggatgagaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaaaagtcaag |
114 |
Q |
| |
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|||| |||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||| | |||||||| ||||| |
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| T |
31716484 |
catacggatgagaagtccacgtagggattggaagatcagaacaagtccaaagctaagatggatgataagat-------------ggtgacaaaaatcaag |
31716398 |
T |
|
| Q |
115 |
aatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggattccaaaggctcgtc |
214 |
Q |
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||||| ||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
31716397 |
aatacttatatgaactttatgctgaagttggctggtaatgtaggaggggcattgaacactgataacaagtttggtgtgaaaaggattccaaaggctcgtc |
31716298 |
T |
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| Q |
215 |
aagtgtctaattctaaagtttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgcatcacatg |
301 |
Q |
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|||| ||||||| |||||||||||||||||| |||||||||||||| ||| |||||||||| || |||||||| ||||||| |
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| T |
31716297 |
aagt------atctaaaggttattctggtgatgcattcgaggctaggcttattttttagatttctaaaactttggttgcttcacatg |
31716217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 293
Target Start/End: Original strand, 31730169 - 31730228
Alignment:
| Q |
234 |
ttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgc |
293 |
Q |
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||||||| ||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
31730169 |
ttattctcgtgatgcttttgaggctagacttatatttgagatttctaaggccttggttgc |
31730228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 31725929 - 31726041
Alignment:
| Q |
25 |
agaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaaaagtcaagaatacgtata |
124 |
Q |
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||||| ||||||||| ||||| ||| | ||||| ||||| ||| |||||| |||| | ||||||||||||| |||||||||| | ||||| |||| |
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| T |
31725929 |
agaagcccacgtaagttttggaggatcaaaacaatcccaaggcttagatgggtgattaaatcaccattgaaaatgttgacaaattttaagaagggttata |
31726028 |
T |
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| Q |
125 |
tgaactttatgtt |
137 |
Q |
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||||||||||||| |
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| T |
31726029 |
tgaactttatgtt |
31726041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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