View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17655_high_1 (Length: 560)
Name: NF17655_high_1
Description: NF17655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17655_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 12 - 542
Target Start/End: Original strand, 9167863 - 9168393
Alignment:
| Q |
12 |
acagatagtaatagtaagtaatattcttcaatatgaaaagatgaactctacttaccacaactgatatcaattcccaatggagttgtgcaatattcaactg |
111 |
Q |
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| T |
9167863 |
acagataataatagtaagtaatattcttcaaaatgaaaagatgaagtctacttaccacaactgatatcaattcccaatggagttgtgcaatagtcaactg |
9167962 |
T |
|
| Q |
112 |
tacatacaagacctccgctgtcgtaattcatgtagcagttttgttggttcatgtcacaagaatcttcacaaggttgtcttatccacgaaagttcaaatcc |
211 |
Q |
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| T |
9167963 |
tacatacaagacctccgctgtcgtaattcatgtagcagttttgttggttcatgtcacaagaatcttcacaaggttgtcttatccacgaaagttcaaatcc |
9168062 |
T |
|
| Q |
212 |
atagcttagaaatcgatgaatttccacatatgaaaaatgttgaaaatctttcttggagataaaagctaaagctgatgacatagtaacaagcttcacgcgg |
311 |
Q |
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| T |
9168063 |
atagcttagaaatcgatgaatttccacatatgaaaaaggttgaaaatctttcttggagataaaagctaaagctgatgacatagtaacaagcttcacgcgg |
9168162 |
T |
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| Q |
312 |
caaccaacattcaatttaacaactctaaagtccccagcaattgcataaatatagctgttattttcggagttcagtctacacgtagatgtatccaaataca |
411 |
Q |
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| T |
9168163 |
caaccaacattcaatttaacaactctaaagtccccagcaattgcataaatatagctgttattttcggagttcagtctacacgtagatgtatccacataca |
9168262 |
T |
|
| Q |
412 |
taggatcgttcttcagttgcttgttacagttcaagtatactacatgctccggcctagaataatcatggaatgcgtatggatcccccttgtactcgtaatg |
511 |
Q |
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| T |
9168263 |
taggatcgttcttcagttgcttgctacagttcaagtatactacatgctccggcctagaataatcatggaatgcgtatggatcccccttgtactcgtaatg |
9168362 |
T |
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| Q |
512 |
actgtaataacttgtgaaattggttgcggtt |
542 |
Q |
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| T |
9168363 |
actgtaataacttgtgaaattggttgcggtt |
9168393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 6e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 44 - 460
Target Start/End: Complemental strand, 9307502 - 9307086
Alignment:
| Q |
44 |
atgaaaagatgaactctacttaccacaactgatatcaattcccaatggagttgtgcaatattcaactgtacatacaagacctccgctgtcgtaattcatg |
143 |
Q |
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| T |
9307502 |
atgaaaagatgaaatctacttaccacaatttatttgaagtcccaatggagttatgcaatcatcattttgacatacaagatatccggcgttgtaatccatg |
9307403 |
T |
|
| Q |
144 |
tagcagttttgttggttcatgtcacaagaatcttcacaaggttgtcttatccacgaaagttcaaatccatagcttagaaatcgatgaatttccacatatg |
243 |
Q |
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| T |
9307402 |
aagcagttttgattgttattgtcacaatgatcttcacaaccacgtctcatccacgaaagttcaaatccatagcttagaagtctatgaatttccttgtacg |
9307303 |
T |
|
| Q |
244 |
aaaaatgttgaaaatctttcttggagataaaagctaaagctgatgacatagtaacaagcttcacgcggcaaccaacattcaatttaacaactctaaagtc |
343 |
Q |
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| T |
9307302 |
gaaaaggttgtcttccctcggtgacgattaaagctggagctgatgatatagtaacaatcttcacacggcaaccaacatttaattcaccaacactaaagtc |
9307203 |
T |
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| Q |
344 |
cccagcaattgcataaatatagctgttattttcggagttcagtctacacgtagatgtatccaaatacataggatcgttcttcagttgcttgttacagttc |
443 |
Q |
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|| | |||||||||||| ||||||||||||| | ||||| | |||||||| ||||||||||| |||| |||||||||||||| ||| ||| |||||||| |
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| T |
9307202 |
cctatcaattgcataaacatagctgttatttgcagagttgattctacacggagatgtatccacgtacagaggatcgttcttcacttgattgctacagttc |
9307103 |
T |
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| Q |
444 |
aagtatactacatgctc |
460 |
Q |
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| T |
9307102 |
aagtatattacgtgctc |
9307086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 328
Target Start/End: Complemental strand, 9475842 - 9475678
Alignment:
| Q |
164 |
gtcacaagaatcttcacaaggttgtcttatccacgaaagttcaaatccatagcttagaaatcgatgaatttccacatatgaaaaatgttgaaaatctttc |
263 |
Q |
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||||||| |||||||||||| || | |||||||||| |||||||||||||||||| | || ||||||||| | || |||||||| || ||| || |
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| T |
9475842 |
gtcacaaaaatcttcacaagcacgtgtaatccacgaaatttcaaatccatagcttagcattccgtgaatttccgcgtaagaaaaatggtgttgatcactc |
9475743 |
T |
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| Q |
264 |
ttggagataaaagctaaagctgatgacatagtaacaagcttcacgcggcaaccaacattcaattt |
328 |
Q |
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| T |
9475742 |
cgagagataaaagcaggagctgctgacatagcaacaagcttcacgtggcaatcaatatttaattt |
9475678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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