View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17655_high_7 (Length: 342)
Name: NF17655_high_7
Description: NF17655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17655_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 136 - 311
Target Start/End: Original strand, 52872902 - 52873077
Alignment:
| Q |
136 |
gttacaggttaaagtgaagaattgggttgatggcaaagaaggtgacatgcttaacgctatgaccgctaaatttggctctattttgcctaaacttgccgat |
235 |
Q |
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| T |
52872902 |
gttacaggttaaagtgaagaattgggttgatggcaaagaaggcgacatgcttaacgctatgaccgctaaatttggctctattttgcctaaacttgccgat |
52873001 |
T |
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| Q |
236 |
caatctctcaaatctcctctcatttcttccattcccgctgactgttgttctccttcaacttccaaggtgcatttct |
311 |
Q |
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| T |
52873002 |
caatctctcaaatctcctctcatttcttccattcccgctgactgttgttctccttcaacttccaaggtgcatttct |
52873077 |
T |
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Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 52872781 - 52872847
Alignment:
| Q |
15 |
caacaacaaatgccgatgacaacaacgccgcatgcaatcacgaaacgcaattggtaattcttacttg |
81 |
Q |
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| T |
52872781 |
caacaacaaatgccgatgacaacaacgccgcatgcaatcacgaaacgcaattggtaattcttacttg |
52872847 |
T |
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