View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17655_low_1 (Length: 729)
Name: NF17655_low_1
Description: NF17655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17655_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 622; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 22 - 683
Target Start/End: Complemental strand, 5363009 - 5362348
Alignment:
| Q |
22 |
tccatatatagttaagttgacaagcgttgtacttgatatacaaagactttgtcctttcaaaaatctcaaatttccaatgatcaaagtattcagtttgttc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5363009 |
tccatatatagttaagttgacaagcgttgtacttgatatacaaagactttgtcctttcagaaatctcaaatttctaatgatcaaagtattcagtttgttc |
5362910 |
T |
|
| Q |
122 |
aaggatgagaagggttcagcgcagccattattgtcagagcgaaagtagaagcctcttagagtcaaggtggttaatgctggcaaattcagagaactcggaa |
221 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5362909 |
aaggacgagaagggttcagcgcagccattattgtcagagcgaaagtagaagcctgttagagtcaaggtggttaatgctggcaaattcagagaactcggaa |
5362810 |
T |
|
| Q |
222 |
ataatattttccaatgatggatataatagtgaatagaaaggtcaagagacgttaaggtttgagatgaaaataagctagactgaagttgttgaatatcaca |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5362809 |
ataatattttccaatgatggatataatagtgaatggaaaggtcaagagacgttaaggtttgagatgaaaataagctagactgaagttgttgaatatcaca |
5362710 |
T |
|
| Q |
322 |
actgacagagattcgtaatagctggacattatgtgaaatggcgtaatttaccatgctttcgagtatttcagggttgacgaaatcctgtgggcggtaaaaa |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5362709 |
actgacagagattcgtaatagctggacattatgtgaaatggcgtaatttaccatgctttcgagtatttcagggtccacgaaatcctgtgggcggtaaaaa |
5362610 |
T |
|
| Q |
422 |
tctagagtgtggagggcagttgaatcatcgcgaagagacaaaatttgagtcagcgatttgatgaaacagtcaaaagagttaaagcccgtggaacttaatc |
521 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5362609 |
tctagactgtggagggcagttgaatcatcgcgaagagacaaaatttgagtcagcaatttgatgaaacagtcaaaagagttaaagcccgtggaacttaatc |
5362510 |
T |
|
| Q |
522 |
taagagttggaatatggtttggtagattcttccatcgtttggagagtatggaagtttgaaaagcttctttggtgtccaataaggagagaatgtgatggag |
621 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5362509 |
taagagttggaatatggtttggtagattcttccatcgtttggagagtatgcaagtttgaaaagcttctttggtgtccaataaggagagaatgtgatggag |
5362410 |
T |
|
| Q |
622 |
aatggaatctggtaaatcagtgagtctatcttccttgttttcaatattcatgttagggtttg |
683 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5362409 |
aatggaatctggtaaatcagtgagtctatcttccttgttttcaatattcatgttagggtttg |
5362348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 22 - 683
Target Start/End: Complemental strand, 5368225 - 5367561
Alignment:
| Q |
22 |
tccatatatagttaagttgacaagcgttgtacttgatatacaaagactttgtcctttcaaaaatctcaaatttccaatgatcaaagtattcagtttgttc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5368225 |
tccatatatagttaagttgacaagcgttgtacttgatatacaaagactttgtcctttcagaaatctcaaatttccaatgatcaaagtattcagtttgttc |
5368126 |
T |
|
| Q |
122 |
aaggatgagaagggttcagcgcagccattattgtcagagcgaaagtagaagcctcttagagtcaaggtggttaatgctggcaaattcagagaactcggaa |
221 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5368125 |
aaggacgagaagggttcagtgcagccattattgtcagagcgaaagtagaagcctgttagagttaaggtggttaatgctggcaaattcagagaactcggaa |
5368026 |
T |
|
| Q |
222 |
ataatattttccaatgatggatataatagtgaatagaaaggtcaagagacgttaaggtttgagatgaaaataagctagactgaagttgttgaatatcaca |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5368025 |
ataatattttccaatgatggatataatagtgaatagaaaggtcaagagacgttaaggtttgagatgaaaataagctagactgaagttgttgaatatcaca |
5367926 |
T |
|
| Q |
322 |
actgacagagattcgtaatagctggacattatgtgaaatggcgtaatttaccatgctttcgagtatttcagggttgacgaaatcctgtgggcggtaaaaa |
421 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| |
|
|
| T |
5367925 |
actgacagagattcgtagtagctggacattatgtgaaatggcgtaatttaccatgctttcgagtattttagggtccacaaaatcctgtgggcggtaaaaa |
5367826 |
T |
|
| Q |
422 |
tctagagtgtggagggcagttgaatcatcgcgaagagacaaaatttgagtcagcgatttgatgaaacagtcaaaagagttaaagcccgtggaacttaatc |
521 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5367825 |
tctagactgtggagggcagttgaatcatcgcgaagagacaaaatttgagtcagcgatttgatgaaacagtcaaaagagttaaagcccgtggaacttaatc |
5367726 |
T |
|
| Q |
522 |
taagagttggaatatggtttggtagattcttccatcgtttggagagtatggaagtttgaaaagcttctttggtgtccaataaggagagaatgtgatggag |
621 |
Q |
| |
|
|||| ||||| | ||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
5367725 |
taagggttggtagatggtttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagagaatgtgatggag |
5367626 |
T |
|
| Q |
622 |
aatggaatctggtaaatcagtgagtct---atcttccttgttttcaatattcatgttagggtttg |
683 |
Q |
| |
|
||| |||||||||||||||| |||||| ||||||||||||||||||||| |||| ||||||| |
|
|
| T |
5367625 |
aatcgaatctggtaaatcagagagtctgtcttcttccttgttttcaatattcgtgttggggtttg |
5367561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 22 - 683
Target Start/End: Complemental strand, 5374779 - 5374115
Alignment:
| Q |
22 |
tccatatatagttaagttgacaagcgttgtacttgatatacaaagactttgtcctttcaaaaatctcaaatttccaatgatcaaagtattcagtttgttc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| || ||| ||||| | |||| || | | | || ||||||||||||||||| || ||| |
|
|
| T |
5374779 |
tccatatatagttaagttgacaagcgttgtatttgatatgcagagaatttgtgccttcagaactggacactgtcgaatgatcaaagtattcaacttcttc |
5374680 |
T |
|
| Q |
122 |
aaggatgagaagggttcagcgcagccattattgtcagagcgaaagtagaagcctcttagagtcaaggtggttaatgctggcaaattcagagaactcggaa |
221 |
Q |
| |
|
|||| ||||||||||| |||||| |||||||| || |||||||||||||||| |||||||||| || |||||||||||||||||||||||| |||||| |
|
|
| T |
5374679 |
aaggctgagaagggtttagcgcaaccattattatctgagcgaaagtagaagctgtttagagtcaaagtagttaatgctggcaaattcagagaattcggaa |
5374580 |
T |
|
| Q |
222 |
ataatattttccaatgatggatataatagtgaatagaaaggtcaagagacgttaaggtttgagatgaaaataagctagactgaagttgttgaatatcaca |
321 |
Q |
| |
|
|||||| | ||| || || ||||||||||||||||| |||||||| ||||||||||||||||||| |||| ||||||||||||||| ||| |
|
|
| T |
5374579 |
ataatactatcccatcttga---------tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaagttgttgaatattaca |
5374489 |
T |
|
| Q |
322 |
actgacagagattcgtaatagctggacattatgtgaaatggcgtaatttaccatgctttcgagtatttcagggt---tga---cgaaatcctgtgggcgg |
415 |
Q |
| |
|
| ||||| ||||||||| | ||||||||||||||| || | || | ||| ||||||| |||||| |||||| ||| ||||||| ||||||||| |
|
|
| T |
5374488 |
agtgacacagattcgtactcgctggacattatgtgtaacagtatagtatacaatgcttttgagtatgtcagggcacatgaaatcgaaatcatgtgggcgg |
5374389 |
T |
|
| Q |
416 |
t---aaaaatctagagtgtggagggcagttgaatcatcgcgaagagacaaaatttgagtcagcgatttgatgaaacagtcaaaagagttaaagcccgtgg |
512 |
Q |
| |
|
| ||| ||||||||||||||| | |||| ||| |||||| |||| ||||| || | ||||| ||||| ||| |||||||||||| | | | |
|
|
| T |
5374388 |
tggtaaagatctagagtgtggagagaagttaaatagtcgcgatgagataaaatcagacaaactgattttgcgaaactgtcgaaagagttaaagactggag |
5374289 |
T |
|
| Q |
513 |
aacttaatctaagagttggaatatggtttggtagattcttccatcgtttggagagtatggaagtttgaaaagcttctttggtgtccaataaggagagaat |
612 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
5374288 |
aacttaatctaagggttggaatatggtttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagagaat |
5374189 |
T |
|
| Q |
613 |
gtgatggagaatggaatctggtaaatcagtgagtct---atcttccttgttttcaatattcatgttagggtttg |
683 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||| |||||||||||| |
|
|
| T |
5374188 |
gtgatggagaatggaatctggtaaatcagagagtctgtcttcttccttgttttccatattcgtgttagggtttg |
5374115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 416 - 683
Target Start/End: Complemental strand, 5356183 - 5355916
Alignment:
| Q |
416 |
taaaaatctagagtgtggagggcagttgaatcatcgcgaagagacaaaatttgagtcagcgatttgatgaaacagtcaaaagagttaaagcccgtggaac |
515 |
Q |
| |
|
|||| ||||||||||||||| | |||| ||||||||||| |||| ||||| ||| | ||||| ||||||| ||||||||||| |||| | ||||||| |
|
|
| T |
5356183 |
taaagatctagagtgtggagagaagttaaatcatcgcgatgagataaaatccgagagactgatttcatgaaactgtcaaaagagtaaaagactgtggaac |
5356084 |
T |
|
| Q |
516 |
ttaatctaagagttggaatatggtttggtagattcttccatcgtttggagagtatggaagtttgaaaagcttctttggtgtccaataaggagagaatgtg |
615 |
Q |
| |
|
|||||||||| |||| | ||| ||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
5356083 |
ttaatctaagggttgagagatgttttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagagaatgtg |
5355984 |
T |
|
| Q |
616 |
atggagaatggaatctggtaaatcagtgagtctatcttccttgttttcaatattcatgttagggtttg |
683 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||| ||||||||||||||| |||||||||||| |
|
|
| T |
5355983 |
atggagaatggaatctggtaaatcagagagtctgtcttcattgttttcaatattcctgttagggtttg |
5355916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 29 - 353
Target Start/End: Complemental strand, 5369024 - 5368700
Alignment:
| Q |
29 |
atagttaagttgacaagcgttgtacttgatatacaaagactttgtcctttcaaaaatctcaaatttccaatgatcaaagtattcagtttgttcaaggatg |
128 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| |||||| ||||| | | || || | | ||| || ||||||||||||||||| |||||||||| || |
|
|
| T |
5369024 |
atagtaaagtttacaagcgttgtgcttgatatgcaaagagtttgtgcatccacaactttacaatgtcgaatgatcaaagtattcaacttgttcaaggttg |
5368925 |
T |
|
| Q |
129 |
agaagggttcagcgcagccattattgtcagagcgaaagtagaagcctcttagagtcaaggtggttaatgctggcaaattcagagaactcggaaataatat |
228 |
Q |
| |
|
||||||||||||| || |||| || | ||| |||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5368924 |
agaagggttcagcacaaccatcatcaccggagagaaagtagaagcttattagagtcaaggtagttaatgctggcaaattcagagaactcggaaataataa |
5368825 |
T |
|
| Q |
229 |
tttccaatgatggatataatagtgaatagaaaggtcaagagacgttaaggtttgagatgaaaataagctagactgaagttgttgaatatcacaactgaca |
328 |
Q |
| |
|
||| | | | || || ||||||||||||||||| |||||||| ||||||||||||||||||| |||| ||||||||||||||| |||| ||||| |
|
|
| T |
5368824 |
tttggcaggtagaatgcgatgatgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaagttgttgaatattacaagtgaca |
5368725 |
T |
|
| Q |
329 |
gagattcgtaatagctggacattat |
353 |
Q |
| |
|
||| ||||| | |||||||||||| |
|
|
| T |
5368724 |
cagactcgtactcgctggacattat |
5368700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 573 - 683
Target Start/End: Original strand, 8400533 - 8400643
Alignment:
| Q |
573 |
aagtttgaaaagcttctttggtgtccaataaggagagaatgtgatggagaatggaatctggtaaatcagtgagtctatcttccttgttttcaatattcat |
672 |
Q |
| |
|
||||||||||| |||||||||| | ||| ||||||||||||||||||| ||||||||| ||||||| ||||||| ||||| ||||||||| | |||| |
|
|
| T |
8400533 |
aagtttgaaaaacttctttggttttcaagaaggagagaatgtgatggataatggaatcaggtaaattgctgagtctgtcttcattgttttcactgctcat |
8400632 |
T |
|
| Q |
673 |
gttagggtttg |
683 |
Q |
| |
|
|||||||||| |
|
|
| T |
8400633 |
tttagggtttg |
8400643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 145
Target Start/End: Complemental strand, 5356360 - 5356244
Alignment:
| Q |
29 |
atagttaagttgacaagcgttgtacttgatatacaaagactttgtcctttcaaaaatctcaaatttccaatgatcaaagtattcagtttgttcaaggatg |
128 |
Q |
| |
|
||||| ||||| ||||| |||||| ||||||| |||||| ||||| | | || || ||| || | || ||||||||||||||||| ||| |||||| | |
|
|
| T |
5356360 |
atagtaaagtttacaagggttgtatttgatatgcaaagagtttgtgcatccagaactctaaattgtcgaatgatcaaagtattcaacttgctcaaggcgg |
5356261 |
T |
|
| Q |
129 |
agaagggttcagcgcag |
145 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5356260 |
agaagggttcagcgcag |
5356244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 250 - 316
Target Start/End: Original strand, 8400207 - 8400273
Alignment:
| Q |
250 |
gtgaatagaaaggtcaagagacgttaaggtttgagatgaaaataagctagactgaagttgttgaata |
316 |
Q |
| |
|
||||| |||||||| |||||| ||||| |||||||||||||||||| ||| ||| |||||||||| |
|
|
| T |
8400207 |
gtgaagagaaaggtgaagagaagttaaagtttgagatgaaaataagaaagatggaaattgttgaata |
8400273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 510 - 638
Target Start/End: Original strand, 30055176 - 30055304
Alignment:
| Q |
510 |
tggaacttaatctaagagttggaatatggtttggtagattcttccatcgtttggagagtatggaagtttgaaaagcttctttggtgtccaataaggagag |
609 |
Q |
| |
|
||||| |||||||||| ||||||| ||| |||| |||| ||||||| | | ||||||||| ||||||||||||||||||| |||| ||| || ||||| |
|
|
| T |
30055176 |
tggaagttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagag |
30055275 |
T |
|
| Q |
610 |
aatgtgatggagaatggaatctggtaaat |
638 |
Q |
| |
|
||||| ||||| ||||||||||||||||| |
|
|
| T |
30055276 |
aatgtcatggataatggaatctggtaaat |
30055304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 250 - 315
Target Start/End: Original strand, 30054956 - 30055021
Alignment:
| Q |
250 |
gtgaatagaaaggtcaagagacgttaaggtttgagatgaaaataagctagactgaagttgttgaat |
315 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||| ||||| |
|
|
| T |
30054956 |
gtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatggaagttggtgaat |
30055021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 545 - 593
Target Start/End: Original strand, 28928465 - 28928513
Alignment:
| Q |
545 |
agattcttccatcgtttggagagtatggaagtttgaaaagcttctttgg |
593 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||| ||||||||||| |
|
|
| T |
28928465 |
agattcttccatcgagtggagagtatgcaagtttgaacagcttctttgg |
28928513 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 6889553 - 6889511
Alignment:
| Q |
184 |
caaggtggttaatgctggcaaattcagagaactcggaaataat |
226 |
Q |
| |
|
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|
|
| T |
6889553 |
caaggtggctaatgctggcaaattaagagaactaggaaataat |
6889511 |
T |
|
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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 52187272 - 52187235
Alignment:
| Q |
177 |
ttagagtcaaggtggttaatgctggcaaattcagagaa |
214 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
52187272 |
ttagagacaagttggttaatgctggcaaattcagagaa |
52187235 |
T |
|
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