View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17655_low_10 (Length: 280)
Name: NF17655_low_10
Description: NF17655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17655_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 26351464 - 26351706
Alignment:
| Q |
18 |
catacattctatcgtattctattagttaatcacattttacttcccccaatttaggtagaatgaaatggaacaacttcttaattgaattttatagttataa |
117 |
Q |
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| T |
26351464 |
catacattctatcacattttattagttaatcacattttacttccc--aatttaggt-----gaaatggaacaacttcttaattgaattttatagttataa |
26351556 |
T |
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| Q |
118 |
aattacttattcatccctatttgtaagaaagcaacaactttctttttctataagcaaa-ttttattagaagcatattagcccaagttgtgcatagctgcc |
216 |
Q |
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| T |
26351557 |
aattacttattcatccctatttgcaagaaagcaacaactttctttttctataagtaaaattttattagaagcatattagcccaagttgtgcatagctgcc |
26351656 |
T |
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| Q |
217 |
aaaatactagagttctcaatgacatctacataatgtgtttattatatatt |
266 |
Q |
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| T |
26351657 |
aaaatactagagttctcaatgacatctacataatgtgtttattatatatt |
26351706 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 2331673 - 2331743
Alignment:
| Q |
166 |
tataagcaaattttattagaagcatattagcccaagttgtgcatagctgc-caaaatactagagttctcaa |
235 |
Q |
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| T |
2331673 |
tataagcaaatctttttagaagcatactagcacaagttgtgcatagctgctaaaaaaactagagttctcaa |
2331743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 7297879 - 7297946
Alignment:
| Q |
166 |
tataagcaaattttattagaagcatattagcccaagttgtgcatagctgccaaaatactagagttctca |
234 |
Q |
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| T |
7297879 |
tataagcaaaatttattagaagcatactagcacaagctacgcatag-agccaaaaaactagagttctca |
7297946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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