View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17655_low_4 (Length: 430)
Name: NF17655_low_4
Description: NF17655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17655_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 11279256 - 11279046
Alignment:
| Q |
3 |
atacgagaggagataatcttgaccacacaaccatatatggattgtcaagattgtgtttacttacatcaaatcctgataatccattgcaattgtatgatta |
102 |
Q |
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| T |
11279256 |
atacgagaggagataatcttgaccacacaaccatatatggattgtcaagattgtgtttacttacatcaaatcctgataatccattgcaattgtatgatta |
11279157 |
T |
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| Q |
103 |
ggattacctcctctgattagtatatcagaactcacatgtccatgatgcgtcttcaatcctctatcctccactctacagtttccatcaattagcagtgtct |
202 |
Q |
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| T |
11279156 |
ggattacctcctctgattagtatatcagaactcacatgtccatgatgcgtcttcaatcctctatcctccactctacagtttccatcaattagcagtgtct |
11279057 |
T |
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| Q |
203 |
taattggaacc |
213 |
Q |
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||||||||||| |
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| T |
11279056 |
taattggaacc |
11279046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 273 - 422
Target Start/End: Complemental strand, 11278986 - 11278837
Alignment:
| Q |
273 |
gttcgtaatcatcaagttttttaggagcatattctctcaagcataataataattcatgaaaagttaaaagtcaaattcacaaattcccttcacttttcat |
372 |
Q |
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| T |
11278986 |
gttcgtaatcatcaagttttttaggagcatattctctcaagcataataataattcatgaaaagttaaaagtcaaattcacaaattcccttcacttttcat |
11278887 |
T |
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| Q |
373 |
atcaaaataaagtgattattccatgaagtgaagcttttaaccatcaaagt |
422 |
Q |
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| T |
11278886 |
atcaaaataaagtgattattccatgaagtgaagcttttaaccatcaaagt |
11278837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 417
Target Start/End: Original strand, 23022108 - 23022235
Alignment:
| Q |
284 |
tcaagttttttaggagcatattctctcaagcataataataattcatgaaaagttaaaagtcaaattcacaaattcccttcacttttcatatcaaaataaa |
383 |
Q |
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||||||||||||| || |||||||||||| ||||||||| | || ||| ||||||| ||||||| ||||||||||||||||||| | ||| ||||| |
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| T |
23022108 |
tcaagttttttagcagaatattctctcaaccataataat---ttataaaatgttaaaattcaaattgacaaattcccttcacttttgaaatc---ataaa |
23022201 |
T |
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| Q |
384 |
gtgattattccatgaagtgaagcttttaaccatc |
417 |
Q |
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| T |
23022202 |
ctgattattcaatgaattgaaaactttaaccatc |
23022235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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