View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17655_low_5 (Length: 397)
Name: NF17655_low_5
Description: NF17655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17655_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 397
Target Start/End: Complemental strand, 11644550 - 11644151
Alignment:
| Q |
11 |
caaaggcagttgaacagtgaacaagctttatataagatcaatatcctatgatacagatttccaagatcaaaatttattatatatttaannnnnnnnnatt |
110 |
Q |
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| T |
11644550 |
caaagccagttgaacaatgaacaagctttatatgagatcaatatcctatgattcagatttc-aagatcaaaatttattatatatttaattttttct-att |
11644453 |
T |
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| Q |
111 |
aaaatcagagccgtttgattttgatcagacaactgtgaacaattgacttcagctactcgactcgactacacttacatt-----caatccatttccgacac |
205 |
Q |
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| T |
11644452 |
aaaattagagccgtttgattttgatcagacaattgtgaacaattgacttcagctactcgactcgactacacttacattatattcaatccattttcgacac |
11644353 |
T |
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| Q |
206 |
aacacataaatttcctatgaaaccaaagagagataaaatcatgtgttttgggtcaagcatttgaggtctgaaataaaagagtttaaaaacacgataaaaa |
305 |
Q |
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| T |
11644352 |
aacacataaatttcctatgaaaccaaagagagataaaatcatgtgttttgggtcaagcatttgaggtctgaaataaaagagtttaaaaacacgataaaaa |
11644253 |
T |
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| Q |
306 |
ca---------ccctgaaacatttcggatttggtaatctgaaccaggtgagaagattgtaaaaagaaactctcaaaaaa-tatcctagagctgactcggt |
395 |
Q |
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| T |
11644252 |
caccctcaacaccctgaaacatttcggatttgataatctgaaccaggtgagaaagttgtaaaaagaaactctcaaaaaactatcctagagctgactcggt |
11644153 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 24970226 - 24970170
Alignment:
| Q |
289 |
taaaaacacgataaaaacaccctgaaacatttcggatttggtaatctgaaccaggtg |
345 |
Q |
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| T |
24970226 |
taaaaacacgttaaaaacaccttgcaacatttcggacttcataatccgaaccaggtg |
24970170 |
T |
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