View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17655_low_7 (Length: 349)
Name: NF17655_low_7
Description: NF17655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17655_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 10 - 333
Target Start/End: Complemental strand, 43674080 - 43673757
Alignment:
| Q |
10 |
aagaaaatgtgggttacacttaaaaccaccttattggagaagacaaattaatgaaaaatgttgttaaaaaggaaatactgcctaccatgccaaattcctc |
109 |
Q |
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| T |
43674080 |
aagaaaatgtgggttacacttaaaaccaccttattggagaagacaaattaatgaaaaatgttgttaaaaaggaaatactgcctaccatgccaaattcctc |
43673981 |
T |
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| Q |
110 |
ggcatcccaactgcagagaacgattgtcctccttggcttccaccctgaatgcagtagaatagagtatcgccgagcaatgtcaagtagggcagctgtccca |
209 |
Q |
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| T |
43673980 |
ggcatcccaactgcagagaacgattgtcctccttggcttccaccctgaatgcagtagaatagagtatcgacgagcaatgtcaagtagggcagctgtccca |
43673881 |
T |
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| Q |
210 |
ctgcttgggtcaacagcaccataagtccatgcatctctatggttcccaagaagaacatggcgatcaggttcttctgatccttttatgacagcaaaaacat |
309 |
Q |
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| T |
43673880 |
ctgcttggatcaacagcaccataagtccatgcatctctatggttcccaagaagaacatggcgatcaggttcttctgatccttttatgacagcaaaaacat |
43673781 |
T |
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| Q |
310 |
tttgaatggtggccactttctttt |
333 |
Q |
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| T |
43673780 |
tttgaatggtggccattttctttt |
43673757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 93 - 317
Target Start/End: Original strand, 43400572 - 43400788
Alignment:
| Q |
93 |
accatgccaaattcctcggcatcccaactgcagagaacgattgtcctccttggcttccaccctgaatgcagtagaatagagtatcgccgagcaatgtcaa |
192 |
Q |
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| T |
43400572 |
accatgccaaatttctctacatcccaactgcggagaacaattgtcctcctctgcttccaccctgaacacaataaaatattgt-----cgagcatggtcaa |
43400666 |
T |
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| Q |
193 |
gtagggcagctgtcccactgcttgggtcaacagcaccataagtccatgcatctctatggttcccaagaagaacatggcgatcaggttcttctgatccttt |
292 |
Q |
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||||| ||||||||| ||||| || |||| ||| | | || ||||||| ||||||||||||||| ||||| |||| ||||||||||||||||||||| |
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| T |
43400667 |
gtaggacagctgtcctactgccgggatcaatagcgc---atgttcatgcatttctatggttcccaagcagaacttggcaatcaggttcttctgatccttt |
43400763 |
T |
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| Q |
293 |
tatgacagcaaaaacattttgaatg |
317 |
Q |
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||| |||| | |||||||||||||| |
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| T |
43400764 |
tatcacagaagaaacattttgaatg |
43400788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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