View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17655_low_9 (Length: 334)

Name: NF17655_low_9
Description: NF17655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17655_low_9
NF17655_low_9
[»] chr3 (30 HSPs)
chr3 (46-318)||(13886096-13886368)
chr3 (1-47)||(48452987-48453033)
chr3 (1-50)||(31779153-31779202)
chr3 (1-48)||(4275865-4275912)
chr3 (1-47)||(20840558-20840604)
chr3 (1-47)||(24301057-24301103)
chr3 (1-47)||(29801917-29801963)
chr3 (1-47)||(43973941-43973987)
chr3 (1-46)||(27394078-27394123)
chr3 (1-46)||(39555577-39555622)
chr3 (1-45)||(25853234-25853278)
chr3 (1-45)||(32535464-32535508)
chr3 (1-45)||(39556078-39556122)
chr3 (1-48)||(45965935-45965982)
chr3 (5-47)||(5137486-5137528)
chr3 (1-39)||(25420642-25420680)
chr3 (1-47)||(26837856-26837902)
chr3 (1-47)||(30104480-30104526)
chr3 (1-50)||(5136975-5137024)
chr3 (1-46)||(20841062-20841107)
chr3 (1-46)||(23644461-23644506)
chr3 (1-50)||(25853728-25853777)
chr3 (4-45)||(29801356-29801397)
chr3 (1-45)||(23228508-23228552)
chr3 (1-45)||(23644966-23645010)
chr3 (4-48)||(37220554-37220598)
chr3 (4-48)||(37222075-37222119)
chr3 (1-45)||(37727431-37727475)
chr3 (1-45)||(43973441-43973485)
chr3 (1-45)||(50116910-50116954)
[»] chr7 (15 HSPs)
chr7 (1-49)||(35289402-35289450)
chr7 (1-48)||(32004611-32004658)
chr7 (1-48)||(34533788-34533835)
chr7 (1-47)||(38859142-38859188)
chr7 (1-50)||(19830415-19830464)
chr7 (5-50)||(28583434-28583479)
chr7 (1-37)||(4478201-4478237)
chr7 (1-45)||(19590525-19590569)
chr7 (1-45)||(35288903-35288947)
chr7 (1-47)||(2658837-2658883)
chr7 (1-47)||(19591026-19591072)
chr7 (4-46)||(19830923-19830965)
chr7 (1-47)||(37787268-37787314)
chr7 (1-47)||(38160949-38160995)
chr7 (1-46)||(37786766-37786811)
[»] chr4 (23 HSPs)
chr4 (1-49)||(51021296-51021344)
chr4 (1-45)||(35363102-35363146)
chr4 (1-48)||(15523232-15523279)
chr4 (1-47)||(23494944-23494990)
chr4 (1-47)||(25447737-25447783)
chr4 (1-46)||(15523735-15523780)
chr4 (1-45)||(11153648-11153692)
chr4 (1-45)||(46193405-46193449)
chr4 (1-48)||(48293591-48293638)
chr4 (1-39)||(4220060-4220098)
chr4 (4-46)||(16318280-16318322)
chr4 (1-39)||(18764021-18764059)
chr4 (1-47)||(20471012-20471058)
chr4 (196-266)||(32897488-32897557)
chr4 (1-39)||(46193906-46193944)
chr4 (1-39)||(54995568-54995606)
chr4 (1-46)||(25938172-25938217)
chr4 (1-45)||(12234830-12234874)
chr4 (1-45)||(22434179-22434223)
chr4 (5-45)||(25447247-25447287)
chr4 (1-49)||(33109965-33110013)
chr4 (1-45)||(45082925-45082969)
chr4 (1-49)||(54995065-54995113)
[»] chr6 (21 HSPs)
chr6 (1-48)||(1149462-1149509)
chr6 (1-46)||(31470314-31470359)
chr6 (1-48)||(23075629-23075676)
chr6 (1-39)||(10899945-10899983)
chr6 (1-47)||(11444985-11445031)
chr6 (1-47)||(11445488-11445534)
chr6 (1-47)||(12935155-12935201)
chr6 (1-47)||(20741098-20741144)
chr6 (1-47)||(22219854-22219900)
chr6 (1-46)||(15828142-15828187)
chr6 (1-46)||(23073998-23074043)
chr6 (1-48)||(12935658-12935705)
chr6 (1-48)||(18257134-18257181)
chr6 (1-47)||(2319670-2319716)
chr6 (1-39)||(18504925-18504963)
chr6 (1-47)||(28472635-28472681)
chr6 (1-47)||(29859824-29859870)
chr6 (1-46)||(20741605-20741650)
chr6 (5-45)||(4811761-4811801)
chr6 (1-45)||(10900431-10900475)
chr6 (1-45)||(11277083-11277127)
[»] chr2 (23 HSPs)
chr2 (1-47)||(239351-239397)
chr2 (1-47)||(43058833-43058879)
chr2 (1-50)||(22374315-22374364)
chr2 (1-46)||(40027139-40027184)
chr2 (1-49)||(11091021-11091069)
chr2 (1-44)||(35781164-35781207)
chr2 (1-47)||(22374826-22374872)
chr2 (1-47)||(26538580-26538626)
chr2 (1-50)||(11090516-11090565)
chr2 (1-46)||(18450829-18450874)
chr2 (1-46)||(28617115-28617160)
chr2 (1-45)||(28616613-28616657)
chr2 (1-48)||(1978610-1978657)
chr2 (1-47)||(18451332-18451378)
chr2 (1-47)||(20440532-20440578)
chr2 (1-39)||(40027641-40027679)
chr2 (1-39)||(40815351-40815389)
chr2 (1-39)||(40815846-40815884)
chr2 (1-38)||(239853-239890)
chr2 (5-46)||(7446341-7446382)
chr2 (1-46)||(20444748-20444793)
chr2 (1-46)||(26538096-26538141)
chr2 (4-45)||(43058333-43058374)
[»] chr5 (22 HSPs)
chr5 (1-49)||(2865256-2865304)
chr5 (1-49)||(18182966-18183014)
chr5 (1-48)||(19359637-19359684)
chr5 (1-47)||(8647939-8647985)
chr5 (1-47)||(18183470-18183516)
chr5 (1-50)||(5818924-5818973)
chr5 (1-46)||(8461432-8461477)
chr5 (1-45)||(5819430-5819474)
chr5 (1-45)||(8647438-8647482)
chr5 (1-48)||(8460927-8460974)
chr5 (1-47)||(14464021-14464067)
chr5 (1-39)||(15372374-15372412)
chr5 (1-47)||(15708969-15709015)
chr5 (1-47)||(24362337-24362383)
chr5 (1-46)||(16018588-16018633)
chr5 (1-46)||(25000590-25000635)
chr5 (1-46)||(29454739-29454784)
chr5 (1-45)||(164191-164235)
chr5 (1-45)||(4623148-4623192)
chr5 (1-45)||(7349518-7349562)
chr5 (5-45)||(15709473-15709513)
chr5 (1-45)||(19359136-19359180)
[»] chr1 (24 HSPs)
chr1 (1-45)||(29306953-29306997)
chr1 (1-49)||(50970274-50970322)
chr1 (1-48)||(26859560-26859607)
chr1 (1-50)||(5539811-5539860)
chr1 (1-46)||(5540319-5540364)
chr1 (1-50)||(8678536-8678585)
chr1 (4-49)||(15173597-15173642)
chr1 (1-46)||(15646696-15646741)
chr1 (1-46)||(39154521-39154566)
chr1 (1-44)||(4636472-4636515)
chr1 (1-48)||(18984116-18984163)
chr1 (1-39)||(5963079-5963117)
chr1 (3-45)||(8679044-8679086)
chr1 (1-47)||(9018971-9019017)
chr1 (1-39)||(15173102-15173140)
chr1 (1-47)||(15646190-15646236)
chr1 (1-39)||(33144420-33144458)
chr1 (1-50)||(17433716-17433765)
chr1 (1-46)||(18984620-18984665)
chr1 (1-46)||(29869619-29869664)
chr1 (1-46)||(50970779-50970824)
chr1 (5-45)||(21856548-21856588)
chr1 (5-45)||(29870124-29870164)
chr1 (1-37)||(33143925-33143961)
[»] scaffold1585 (1 HSPs)
scaffold1585 (1-44)||(568-611)
[»] scaffold0057 (2 HSPs)
scaffold0057 (1-48)||(61025-61072)
scaffold0057 (1-39)||(61959-61997)
[»] chr8 (19 HSPs)
chr8 (1-48)||(41681131-41681178)
chr8 (1-39)||(4630287-4630325)
chr8 (1-47)||(11656453-11656499)
chr8 (1-47)||(12571861-12571907)
chr8 (1-47)||(19176288-19176334)
chr8 (1-47)||(34541049-34541095)
chr8 (1-46)||(11656958-11657003)
chr8 (1-46)||(13225140-13225185)
chr8 (1-45)||(9178136-9178180)
chr8 (3-47)||(19176793-19176837)
chr8 (1-48)||(31133217-31133264)
chr8 (1-44)||(31133721-31133764)
chr8 (1-47)||(11337023-11337069)
chr8 (1-39)||(13224647-13224685)
chr8 (1-39)||(33328164-33328202)
chr8 (1-47)||(33742920-33742966)
chr8 (1-46)||(9930158-9930203)
chr8 (1-46)||(44831246-44831291)
chr8 (1-45)||(41681635-41681679)
[»] scaffold0295 (1 HSPs)
scaffold0295 (1-47)||(4791-4837)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-47)||(134174-134220)
[»] scaffold0176 (1 HSPs)
scaffold0176 (1-45)||(19122-19166)
[»] scaffold0951 (2 HSPs)
scaffold0951 (1-48)||(1664-1711)
scaffold0951 (1-47)||(2168-2214)
[»] scaffold1223 (1 HSPs)
scaffold1223 (2-48)||(750-796)
[»] scaffold0273 (1 HSPs)
scaffold0273 (1-47)||(4708-4754)
[»] scaffold0113 (1 HSPs)
scaffold0113 (1-39)||(28744-28782)
[»] scaffold0417 (1 HSPs)
scaffold0417 (1-45)||(11124-11168)


Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 46 - 318
Target Start/End: Original strand, 13886096 - 13886368
Alignment:
Q  46 tattagtattttatagcagggggttcgaatagaaattcttctcaacaccagggtgtggatagaaggtttgctgagtaaaaacaatatctccgtatactgg 145  Q
    |||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13886096 tattagtattttatagaagggggtacgaatagaatttcttctcaacaccagggtgtggatagaaggtttgctgagtaaaaacaatatctccgtatactgg 13886195  T
Q  146 gctggaaatgacccaatgaaggagtttccccaatttaaataactgactgcagcagaaagaaggaggtgcagaaagtattctggttcttgtctactttttc 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  13886196 gctggaaatgacccaatgaaggagtttccccaatttaaataactgactgcagcagaaagaaggaggtacagaaagtatactggttcttgtctactttttc 13886295  T
Q  246 tattgattcaagttctaaaaacaaaagttattcacttactcgttcataactaaaatcttagtccctaaatact 318  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  13886296 tattgattcaagttctaaaaacaaaagttattcacttactcgtccataactaaaatcttagtctctaaatact 13886368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 48453033 - 48452987
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||    
T  48453033 ttcgtgagtaggccaaaacacgatgaccaaaagtgtaatcaagccta 48452987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 31779153 - 31779202
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatta 50  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||||||    
T  31779153 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctatta 31779202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 4275865 - 4275912
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 48  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||||    
T  4275865 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctat 4275912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 20840604 - 20840558
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||    
T  20840604 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 20840558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24301057 - 24301103
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||    
T  24301057 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 24301103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 29801917 - 29801963
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    |||||||||||||||||| |||| ||||||||||||||| |||||||    
T  29801917 ttcgtgagtaggccaaaatacgaggatcaaaagtgtaattaagccta 29801963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43973941 - 43973987
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||    
T  43973941 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 43973987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 27394078 - 27394123
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||    
T  27394078 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 27394123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 39555622 - 39555577
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||    
T  39555622 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 39555577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25853278 - 25853234
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||||||||||||||||||| || |||||||||||| |||||    
T  25853278 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 25853234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 32535464 - 32535508
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||||||||||||||||||| || |||||||||||| |||||    
T  32535464 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 32535508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39556078 - 39556122
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||||||||||||||||||| || |||||||||||| |||||    
T  39556078 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 39556122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 45965982 - 45965935
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 48  Q
    |||||||||| |||||||||||| || |||||||||||| ||||||||    
T  45965982 ttcgtgagtatgccaaaacacgaggaccaaaagtgtaattaagcctat 45965935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 5137486 - 5137528
Alignment:
Q  5 tgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||| || |||||||||||| |||||||    
T  5137486 tgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 5137528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25420642 - 25420680
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 39  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  25420642 ttcgtgagtaggtcaaaatacgatgatcaaaagtgtaat 25420680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 26837856 - 26837902
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||| ||||||||||||||||| || |||||||||||| |||||||    
T  26837856 ttcgtaagtaggccaaaacacgaggaccaaaagtgtaattaagccta 26837902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 30104526 - 30104480
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    |||||||||||| |||||||||| || |||||||||||| |||||||    
T  30104526 ttcgtgagtaggtcaaaacacgaggaccaaaagtgtaattaagccta 30104480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5137024 - 5136975
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatta 50  Q
    ||||||||| ||||||||||||| || |||||||||||| || |||||||    
T  5137024 ttcgtgagttggccaaaacacgaggaccaaaagtgtaattaaacctatta 5136975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 20841062 - 20841107
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    |||||||||||||||||||||||  | |||||||||||| ||||||    
T  20841062 ttcgtgagtaggccaaaacacgagcaccaaaagtgtaattaagcct 20841107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 23644506 - 23644461
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    |||||||||||||||||| |||| || |||||||||||| ||||||    
T  23644506 ttcgtgagtaggccaaaatacgaggaccaaaagtgtaattaagcct 23644461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 25853728 - 25853777
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatta 50  Q
    |||||||||||  |||||||||| ||||||||||||||| ||| ||||||    
T  25853728 ttcgtgagtagagcaaaacacgaggatcaaaagtgtaattaagtctatta 25853777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 29801397 - 29801356
Alignment:
Q  4 gtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||| ||||||||||||||| |||||||||||| |||||    
T  29801397 gtgagtatgccaaaacacgatgaccaaaagtgtaattaagcc 29801356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23228508 - 23228552
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||||||||||||||||||  || |||||||||||| |||||    
T  23228508 ttcgtgagtaggccaaaacacggggaccaaaagtgtaattaagcc 23228552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23644966 - 23645010
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||||||||||||||||||| || ||||||| |||| |||||    
T  23644966 ttcgtgagtaggccaaaacacgaggaccaaaagtataattaagcc 23645010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 37220598 - 37220554
Alignment:
Q  4 gtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 48  Q
    ||||||||||||||| |||| || |||||||||||| ||||||||    
T  37220598 gtgagtaggccaaaatacgaggaccaaaagtgtaattaagcctat 37220554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 37222075 - 37222119
Alignment:
Q  4 gtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 48  Q
    ||||||||| |||||||||| || |||||||||||| ||||||||    
T  37222075 gtgagtagggcaaaacacgaggaccaaaagtgtaattaagcctat 37222119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37727431 - 37727475
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    |||||||||||||||||||| || || |||||||||||| |||||    
T  37727431 ttcgtgagtaggccaaaacatgaggaccaaaagtgtaattaagcc 37727475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 43973485 - 43973441
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    |||||||||||| |||||||||| || |||||||||||| |||||    
T  43973485 ttcgtgagtaggacaaaacacgaggaccaaaagtgtaattaagcc 43973441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 50116910 - 50116954
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    |||||||||| | |||||||||| ||||||||||||||| |||||    
T  50116910 ttcgtgagtaagtcaaaacacgaggatcaaaagtgtaattaagcc 50116954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 35289402 - 35289450
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatt 49  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  35289402 ttcgtgagtaggccaaaacacgaggatcaaaagtgtaattaagcctatt 35289450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32004658 - 32004611
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 48  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||||    
T  32004658 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctat 32004611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 34533835 - 34533788
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 48  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||||    
T  34533835 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctat 34533788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 38859142 - 38859188
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||    
T  38859142 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 38859188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 19830464 - 19830415
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatta 50  Q
    ||||||||||||||||||||||| || |||||||||||| || |||||||    
T  19830464 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaaacctatta 19830415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 28583479 - 28583434
Alignment:
Q  5 tgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatta 50  Q
    ||||||||||||||||||| || |||||||||||| ||||||||||    
T  28583479 tgagtaggccaaaacacgaggaccaaaagtgtaattaagcctatta 28583434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4478201 - 4478237
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgta 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  4478201 ttcgtgagtaggccaaaacacgaggatcaaaagtgta 4478237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19590569 - 19590525
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||||||||||||||||||| || |||||||||||| |||||    
T  19590569 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 19590525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35288947 - 35288903
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    |||||||||||||||||| ||||||| |||||||||||| |||||    
T  35288947 ttcgtgagtaggccaaaatacgatgaccaaaagtgtaattaagcc 35288903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2658883 - 2658837
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| ||  ||||||||||| |||||||    
T  2658883 ttcgtgagtaggccaaaacacgaggacaaaaagtgtaattaagccta 2658837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 19591026 - 19591072
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    |||||||||||||||||||||||  | |||||||||||| |||||||    
T  19591026 ttcgtgagtaggccaaaacacgagtaccaaaagtgtaattaagccta 19591072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 19830923 - 19830965
Alignment:
Q  4 gtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    |||||||||||||||||||| || |||||||||||| ||||||    
T  19830923 gtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 19830965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 37787268 - 37787314
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| || ||||||| |||| |||||||    
T  37787268 ttcgtgagtaggccaaaacacgaggaccaaaagtataattaagccta 37787314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 38160995 - 38160949
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||| ||| || |||||||||||| |||||||    
T  38160995 ttcgtgagtaggccaaaacccgaggaccaaaagtgtaattaagccta 38160949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37786811 - 37786766
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    ||||| ||||||||||||||||| || |||||||||||| ||||||    
T  37786811 ttcgtaagtaggccaaaacacgaggaccaaaagtgtaattaagcct 37786766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 51021296 - 51021344
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatt 49  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  51021296 ttcgtgagtaggccaaaacacgaggatcaaaagtgtaattaagcctatt 51021344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 35363102 - 35363146
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||    
T  35363102 ttcgtgagtaggccaaaacacgaggatcaaaagtgtaattaagcc 35363146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 15523279 - 15523232
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 48  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||||    
T  15523279 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctat 15523232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 23494944 - 23494990
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||    
T  23494944 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 23494990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 25447737 - 25447783
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||    
T  25447737 ttcgtgagtaggccaaaacacgaagaccaaaagtgtaattaagccta 25447783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 15523735 - 15523780
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    ||||||||||| |||||||||||||| |||||||||||| ||||||    
T  15523735 ttcgtgagtagcccaaaacacgatgaccaaaagtgtaattaagcct 15523780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11153648 - 11153692
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||||||||||||||||||| || |||||||||||| |||||    
T  11153648 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 11153692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 46193449 - 46193405
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||||||||||||||||||| || |||||||||||| |||||    
T  46193449 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 46193405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 48293638 - 48293591
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 48  Q
    |||||||||| |||||||||||| || |||||||||||| ||||||||    
T  48293638 ttcgtgagtaagccaaaacacgaggaccaaaagtgtaattaagcctat 48293591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 4220060 - 4220098
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 39  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  4220060 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 4220098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 16318280 - 16318322
Alignment:
Q  4 gtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    |||||||||||||||||||| || |||||||||||| ||||||    
T  16318280 gtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 16318322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 18764021 - 18764059
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 39  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  18764021 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 18764059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 20471012 - 20471058
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||| ||||||||||||||||| || |||||||||||| |||||||    
T  20471012 ttcgtaagtaggccaaaacacgaggaccaaaagtgtaattaagccta 20471058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 266
Target Start/End: Original strand, 32897488 - 32897557
Alignment:
Q  196 agcagaaagaaggaggtgcagaaagtattctggttcttgtctactttttctattgattcaagttctaaaaa 266  Q
    ||||||||  |||| |||||||||||| ||||||||   |||| |||||||||| ||||||||||||||||    
T  32897488 agcagaaaagaggaagtgcagaaagtagtctggttcaaatcta-tttttctattaattcaagttctaaaaa 32897557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 46193906 - 46193944
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 39  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  46193906 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 46193944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 54995568 - 54995606
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 39  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  54995568 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 54995606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25938172 - 25938217
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    ||||||||||||||||||||| | || |||||||||||| ||||||    
T  25938172 ttcgtgagtaggccaaaacacaaggaccaaaagtgtaattaagcct 25938217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12234830 - 12234874
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||||||||||||||||||| || ||||||| |||| |||||    
T  12234830 ttcgtgagtaggccaaaacacgaggaccaaaagtataattaagcc 12234874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 22434223 - 22434179
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    |||||||||| |||||||||||| || |||||||||||| |||||    
T  22434223 ttcgtgagtatgccaaaacacgaggaccaaaagtgtaattaagcc 22434179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 25447287 - 25447247
Alignment:
Q  5 tgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||||||||||||||| || |||||||||||| |||||    
T  25447287 tgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 25447247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33109965 - 33110013
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatt 49  Q
    |||||||| ||||||||||| || || |||||||||||| |||||||||    
T  33109965 ttcgtgagcaggccaaaacatgaggaccaaaagtgtaattaagcctatt 33110013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 45082925 - 45082969
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    |||||||||| |||||||||||| || |||||||||||| |||||    
T  45082925 ttcgtgagtaagccaaaacacgaggaccaaaagtgtaattaagcc 45082969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 54995113 - 54995065
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatt 49  Q
    |||||||||||||||| |||||| || |||||||||||| || ||||||    
T  54995113 ttcgtgagtaggccaatacacgaggaccaaaagtgtaattaaacctatt 54995065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 1149509 - 1149462
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 48  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  1149509 ttcgtgagtaggccaaaacacgaggatcaaaagtgtaattaagcctat 1149462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 31470359 - 31470314
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||    
T  31470359 ttcgtgagtaggccaaaacacgaggatcaaaagtgtaattaagcct 31470314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 23075629 - 23075676
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 48  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||||    
T  23075629 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctat 23075676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 10899983 - 10899945
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 39  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  10899983 ttcgtgagtaggccaaaacacgatgaccaaaagtgtaat 10899945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11445031 - 11444985
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||    
T  11445031 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 11444985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 11445488 - 11445534
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||    
T  11445488 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 11445534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12935201 - 12935155
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||    
T  12935201 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 12935155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 20741144 - 20741098
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||    
T  20741144 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 20741098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22219854 - 22219900
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||    
T  22219854 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 22219900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 15828142 - 15828187
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||    
T  15828142 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 15828187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 23074043 - 23073998
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||    
T  23074043 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 23073998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 12935658 - 12935705
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 48  Q
    |||||||||| |||||||||||| || |||||||||||| ||||||||    
T  12935658 ttcgtgagtacgccaaaacacgaggaccaaaagtgtaattaagcctat 12935705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 18257181 - 18257134
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 48  Q
    |||||||||| |||||||||||| || |||||||||||| ||||||||    
T  18257181 ttcgtgagtatgccaaaacacgaggaccaaaagtgtaattaagcctat 18257134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2319716 - 2319670
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| || ||||| |||||| |||||||    
T  2319716 ttcgtgagtaggccaaaacacgaggaccaaaaatgtaattaagccta 2319670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 18504963 - 18504925
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 39  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  18504963 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 18504925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 28472681 - 28472635
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||| ||||||||||||| || |||||||||||| |||||||    
T  28472681 ttcgtgagttggccaaaacacgaggaccaaaagtgtaattaagccta 28472635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29859870 - 29859824
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||| ||||||||||||| || |||||||||||| |||||||    
T  29859870 ttcgtgagttggccaaaacacgaggaccaaaagtgtaattaagccta 29859824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 20741605 - 20741650
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    ||||||||||||||||||||||| || ||| |||||||| ||||||    
T  20741605 ttcgtgagtaggccaaaacacgaggaccaagagtgtaattaagcct 20741650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 4811761 - 4811801
Alignment:
Q  5 tgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||||||||||||||| |||||||||| |||| |||||    
T  4811761 tgagtaggccaaaacacgaggatcaaaagtataattaagcc 4811801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10900431 - 10900475
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    |||||||||||||||||| |||| || |||||||||||| |||||    
T  10900431 ttcgtgagtaggccaaaatacgaggaccaaaagtgtaattaagcc 10900475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11277083 - 11277127
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    |||||||||| |||||||||||| || |||||||||||| |||||    
T  11277083 ttcgtgagtaagccaaaacacgaggaccaaaagtgtaattaagcc 11277127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 239397 - 239351
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||    
T  239397 ttcgtgagtaggccaaaacacgatgaccaaaagtgtaattaagccta 239351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43058833 - 43058879
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||    
T  43058833 ttcgtgagtaggccaaaacacgaggatcaaaagtgtaattaagccta 43058879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 22374364 - 22374315
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatta 50  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||||||    
T  22374364 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctatta 22374315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 40027184 - 40027139
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||    
T  40027184 ttcgtgagtaggccaaaacacgatgaccaaaagtgtaattaagcct 40027139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11091021 - 11091069
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatt 49  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||||    
T  11091021 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctatt 11091069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 35781164 - 35781207
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagc 44  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||    
T  35781164 ttcgtgagtaggccaaaacacgaggatcaaaagtgtaattaagc 35781207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22374826 - 22374872
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||    
T  22374826 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 22374872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 26538580 - 26538626
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||    
T  26538580 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 26538626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 11090565 - 11090516
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatta 50  Q
    ||||||||||||||||||||||| || |||||||||||| || |||||||    
T  11090565 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaaacctatta 11090516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 18450874 - 18450829
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||    
T  18450874 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 18450829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 28617115 - 28617160
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||    
T  28617115 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 28617160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28616657 - 28616613
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||||||||||||||||||| || |||||||||||| |||||    
T  28616657 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 28616613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 1978610 - 1978657
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 48  Q
    ||||||||||||||||||||| | || |||||||||||| ||||||||    
T  1978610 ttcgtgagtaggccaaaacacaaggaccaaaagtgtaattaagcctat 1978657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 18451332 - 18451378
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||| ||||||||||||||||| || |||||||||||| |||||||    
T  18451332 ttcgtaagtaggccaaaacacgaggaccaaaagtgtaattaagccta 18451378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 20440532 - 20440578
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||| ||||||||||||| || |||||||||||| |||||||    
T  20440532 ttcgtgagttggccaaaacacgaggaccaaaagtgtaattaagccta 20440578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 40027641 - 40027679
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 39  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  40027641 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 40027679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 40815389 - 40815351
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 39  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  40815389 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 40815351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 40815846 - 40815884
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 39  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  40815846 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 40815884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 239853 - 239890
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaa 38  Q
    ||||||||||||||||||||||| || |||||||||||    
T  239853 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaa 239890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 7446382 - 7446341
Alignment:
Q  5 tgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||    
T  7446382 tgagtagaccaaaacacgaggatcaaaagtgtaattaagcct 7446341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 20444793 - 20444748
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    ||||||||| ||||||||||||| || |||||||||||| ||||||    
T  20444793 ttcgtgagttggccaaaacacgaggaccaaaagtgtaattaagcct 20444748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 26538141 - 26538096
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    |||||||||| |||||||||||| || |||||||||||| ||||||    
T  26538141 ttcgtgagtaagccaaaacacgaggaccaaaagtgtaattaagcct 26538096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 43058374 - 43058333
Alignment:
Q  4 gtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    |||||| ||||||||||||| ||||||||||||||| |||||    
T  43058374 gtgagttggccaaaacacgaggatcaaaagtgtaattaagcc 43058333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2865256 - 2865304
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatt 49  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||||    
T  2865256 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctatt 2865304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18183014 - 18182966
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatt 49  Q
    |||||||||||||||||||||||||| |||||||||||| || ||||||    
T  18183014 ttcgtgagtaggccaaaacacgatgaccaaaagtgtaattaaacctatt 18182966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 19359637 - 19359684
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 48  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||||    
T  19359637 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctat 19359684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8647939 - 8647985
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||    
T  8647939 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 8647985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 18183470 - 18183516
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||    
T  18183470 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 18183516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5818973 - 5818924
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatta 50  Q
    ||||||||||||||||||||||| || |||||||||||| || |||||||    
T  5818973 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaaacctatta 5818924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8461432 - 8461477
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||    
T  8461432 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 8461477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5819430 - 5819474
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||||||||||||||||||| || |||||||||||| |||||    
T  5819430 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 5819474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8647482 - 8647438
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||||||||||||||||||| || |||||||||||| |||||    
T  8647482 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 8647438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8460974 - 8460927
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 48  Q
    |||||||||||||||||| ||||||| |||||||| ||| ||||||||    
T  8460974 ttcgtgagtaggccaaaatacgatgaccaaaagtggaattaagcctat 8460927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 14464021 - 14464067
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| ||  ||||||||||| |||||||    
T  14464021 ttcgtgagtaggccaaaacacgaggactaaaagtgtaattaagccta 14464067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 15372374 - 15372412
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 39  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  15372374 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 15372412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 15709015 - 15708969
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||| | || |||||||||||| |||||||    
T  15709015 ttcgtgagtaggccaaaacactaggaccaaaagtgtaattaagccta 15708969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24362337 - 24362383
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    |||||||||||||||||| |||| || |||||||||||| |||||||    
T  24362337 ttcgtgagtaggccaaaatacgaggaccaaaagtgtaattaagccta 24362383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16018633 - 16018588
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    ||||||| ||||||||||||||| || |||||||||||| ||||||    
T  16018633 ttcgtgaataggccaaaacacgaagaccaaaagtgtaattaagcct 16018588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25000590 - 25000635
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    |||||||||||||||||||| || || |||||||||||| ||||||    
T  25000590 ttcgtgagtaggccaaaacatgaagaccaaaagtgtaattaagcct 25000635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 29454784 - 29454739
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    ||||||||||||||||||||| |||| |||||||| ||| ||||||    
T  29454784 ttcgtgagtaggccaaaacacaatgaccaaaagtgaaattaagcct 29454739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 164235 - 164191
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    |||||||||||| |||||||||| || |||||||||||| |||||    
T  164235 ttcgtgagtaggtcaaaacacgaggaccaaaagtgtaattaagcc 164191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4623192 - 4623148
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    |||||||||| | ||||||||||||| |||||||||||| |||||    
T  4623192 ttcgtgagtaagtcaaaacacgatgaccaaaagtgtaattaagcc 4623148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 7349518 - 7349562
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||||||| ||||||||||| || |||||||||||| |||||    
T  7349518 ttcgtgagtagaccaaaacacgaggaccaaaagtgtaattaagcc 7349562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 15709473 - 15709513
Alignment:
Q  5 tgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||||||||||||| |||| |||||||||||| |||||    
T  15709473 tgagtaggccaaaacacaatgaccaaaagtgtaattaagcc 15709513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19359180 - 19359136
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    |||||||||||||||||||| || || |||||||||||| |||||    
T  19359180 ttcgtgagtaggccaaaacaagaggaccaaaagtgtaattaagcc 19359136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29306997 - 29306953
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||    
T  29306997 ttcgtgagtaggccaaaacacgaggatcaaaagtgtaattaagcc 29306953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 50970322 - 50970274
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatt 49  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||||    
T  50970322 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctatt 50970274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 26859560 - 26859607
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 48  Q
    ||||||||||| ||||||||||| ||||||||||||||| ||||||||    
T  26859560 ttcgtgagtagcccaaaacacgaggatcaaaagtgtaattaagcctat 26859607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5539860 - 5539811
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatta 50  Q
    ||||||||||||||||||||||| || |||||||||||| |||| |||||    
T  5539860 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcatatta 5539811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 5540319 - 5540364
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||    
T  5540319 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 5540364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 8678585 - 8678536
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatta 50  Q
    ||||||||||||||||||||||| || |||||||||||| |||| |||||    
T  8678585 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcatatta 8678536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 15173597 - 15173642
Alignment:
Q  4 gtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatt 49  Q
    |||||||||||||||||||| || |||||||||||| |||||||||    
T  15173597 gtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctatt 15173642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 15646696 - 15646741
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||    
T  15646696 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 15646741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 39154521 - 39154566
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||    
T  39154521 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 39154566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 4636472 - 4636515
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagc 44  Q
    ||||||||||||||||||||||| || |||||||||||| ||||    
T  4636472 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagc 4636515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 18984163 - 18984116
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 48  Q
    ||||||||||| ||||||||||| || |||||||||||| ||||||||    
T  18984163 ttcgtgagtagaccaaaacacgaggaccaaaagtgtaattaagcctat 18984116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 5963079 - 5963117
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 39  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  5963079 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 5963117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 8679044 - 8679086
Alignment:
Q  3 cgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||||||||||||||||| || |||||||||||| |||||    
T  8679044 cgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 8679086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9019017 - 9018971
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||| ||||||||||||||||| || |||||||||||| |||||||    
T  9019017 ttcgttagtaggccaaaacacgaggaccaaaagtgtaattaagccta 9018971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 15173140 - 15173102
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 39  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  15173140 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 15173102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 15646236 - 15646190
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| || ||||||| |||| |||||||    
T  15646236 ttcgtgagtaggccaaaacacgaggaccaaaagtataattaagccta 15646190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 33144420 - 33144458
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 39  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  33144420 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 33144458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 17433716 - 17433765
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatta 50  Q
    ||||||||||||||| ||||||| || |||||||||||| ||| ||||||    
T  17433716 ttcgtgagtaggccagaacacgaggaccaaaagtgtaattaagtctatta 17433765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 18984620 - 18984665
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    ||||||||||||||||||||| | || |||||||||||| ||||||    
T  18984620 ttcgtgagtaggccaaaacacaaggaccaaaagtgtaattaagcct 18984665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 29869664 - 29869619
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    |||||||||| |||||||||||| || |||||||||||| ||||||    
T  29869664 ttcgtgagtatgccaaaacacgaggaccaaaagtgtaattaagcct 29869619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 50970779 - 50970824
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    ||||| ||||||||||||||||| || |||||||||||| ||||||    
T  50970779 ttcgtaagtaggccaaaacacgaggaccaaaagtgtaattaagcct 50970824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 21856548 - 21856588
Alignment:
Q  5 tgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||||||||||||||| || |||||||||||| |||||    
T  21856548 tgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 21856588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 29870124 - 29870164
Alignment:
Q  5 tgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||||||||||||||| || |||||||||||| |||||    
T  29870124 tgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 29870164  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33143961 - 33143925
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgta 37  Q
    ||||||||||||||||||||||| || ||||||||||    
T  33143961 ttcgtgagtaggccaaaacacgaggaccaaaagtgta 33143925  T

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Target: scaffold1585 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1585
Description:

Target: scaffold1585; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 611 - 568
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagc 44  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||    
T  611 ttcgtgagtaggccaaaacacgaggatcaaaagtgtaattaagc 568  T

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Target: scaffold0057 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 61072 - 61025
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 48  Q
    ||||||||||||||||||||||| ||||||||||||| | ||||||||    
T  61072 ttcgtgagtaggccaaaacacgaggatcaaaagtgtacttaagcctat 61025  T

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Target: scaffold0057; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 61959 - 61997
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 39  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  61959 ttcgtgagtagaccaaaacacgaggatcaaaagtgtaat 61997  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 41681178 - 41681131
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 48  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||||    
T  41681178 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctat 41681131  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 4630287 - 4630325
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 39  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  4630287 ttcgtgagtagcccaaaacacgatgatcaaaagtgtaat 4630325  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11656499 - 11656453
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||    
T  11656499 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 11656453  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12571907 - 12571861
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||    
T  12571907 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 12571861  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 19176334 - 19176288
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||    
T  19176334 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 19176288  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 34541049 - 34541095
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||    
T  34541049 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 34541095  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 11656958 - 11657003
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||    
T  11656958 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 11657003  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 13225140 - 13225185
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||    
T  13225140 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 13225185  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9178136 - 9178180
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||||||||||||||||||| || |||||||||||| |||||    
T  9178136 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 9178180  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 19176793 - 19176837
Alignment:
Q  3 cgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||| || |||||||||||| |||||||    
T  19176793 cgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 19176837  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 31133264 - 31133217
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 48  Q
    |||||||||||| |||||||||| || |||||||||||| ||||||||    
T  31133264 ttcgtgagtagggcaaaacacgaggaccaaaagtgtaattaagcctat 31133217  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 31133721 - 31133764
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagc 44  Q
    ||||||||||||||||||||||| || |||||||||||| ||||    
T  31133721 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagc 31133764  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 11337023 - 11337069
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    |||||||||| |||||||||||| || |||||||||||| |||||||    
T  11337023 ttcgtgagtaagccaaaacacgaagaccaaaagtgtaattaagccta 11337069  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 13224685 - 13224647
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 39  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  13224685 ttcgtgagtaggccaaaacacgaagaccaaaagtgtaat 13224647  T

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Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 33328202 - 33328164
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 39  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  33328202 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 33328164  T

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Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33742966 - 33742920
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    |||||||||||| |||||||||| || |||||||||||| |||||||    
T  33742966 ttcgtgagtaggtcaaaacacgaggaccaaaagtgtaattaagccta 33742920  T

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Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9930158 - 9930203
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    |||||||||||||||||| |||| || |||||||||||| ||||||    
T  9930158 ttcgtgagtaggccaaaatacgaggaccaaaagtgtaattaagcct 9930203  T

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Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 44831291 - 44831246
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 46  Q
    |||||||||||||||||||| || || |||||||||||| ||||||    
T  44831291 ttcgtgagtaggccaaaacatgaggaccaaaagtgtaattaagcct 44831246  T

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Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 41681635 - 41681679
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||| ||||||||||||||| || |||||||||||| |||||    
T  41681635 ttcgtgattaggccaaaacacgaggaccaaaagtgtaattaagcc 41681679  T

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Target: scaffold0295 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4837 - 4791
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||    
T  4837 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 4791  T

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Target: scaffold0019 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 134174 - 134220
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||    
T  134174 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 134220  T

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Target: scaffold0176 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19122 - 19166
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||||||||||||||||||||| || |||||||||||| |||||    
T  19122 ttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 19166  T

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Target: scaffold0951 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0951
Description:

Target: scaffold0951; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 1711 - 1664
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 48  Q
    |||||||||||||||||||| || || |||||||||||| ||||||||    
T  1711 ttcgtgagtaggccaaaacaggaggaccaaaagtgtaattaagcctat 1664  T

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Target: scaffold0951; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2168 - 2214
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    ||||| ||||||||||||||||| || |||||||||||| |||||||    
T  2168 ttcgtaagtaggccaaaacacgaggaccaaaagtgtaattaagccta 2214  T

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Target: scaffold1223 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1223
Description:

Target: scaffold1223; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 796 - 750
Alignment:
Q  2 tcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 48  Q
    |||||||||||||||||||||| || |||||||||||| ||| ||||    
T  796 tcgtgagtaggccaaaacacgaagaccaaaagtgtaattaagtctat 750  T

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Target: scaffold0273 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4708 - 4754
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 47  Q
    |||||||||| |||||||||||| || |||||||||||| |||||||    
T  4708 ttcgtgagtatgccaaaacacgaagaccaaaagtgtaattaagccta 4754  T

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Target: scaffold0113 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 28744 - 28782
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 39  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  28744 ttcgtaagtaggccaaaacacgatgaccaaaagtgtaat 28782  T

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Target: scaffold0417 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11124 - 11168
Alignment:
Q  1 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 45  Q
    ||||| ||||||||||||||||| || |||||||||||| |||||    
T  11124 ttcgtaagtaggccaaaacacgaggaccaaaagtgtaattaagcc 11168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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