View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17656_high_1 (Length: 514)
Name: NF17656_high_1
Description: NF17656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17656_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 6178249 - 6178520
Alignment:
| Q |
18 |
aaacaatagttccttaca----gcaagacacttgtctttcatgcaaaacttttggttaaatcttattaatctttagtaccctttaaaaagattttataaa |
113 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6178249 |
aaacaatagttccttacatatagcaagacacttgtctttcatgcaaaacatttggttaaatcttattaatctttagtaccctttaaaaagattttataaa |
6178348 |
T |
|
| Q |
114 |
aatgtcataagaattggataaaggnnnnnnnn--tagtttgaattatagaagatgctcatcaaagacaagaaatctttcattgttcttgaatgttggtca |
211 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6178349 |
aatgtcataagaattggataagggaaaaaaaaaatagtttgaattatagaagatgctcatcaaagacaagaaatctttcattgttcttgaatgttggtca |
6178448 |
T |
|
| Q |
212 |
tatgttggaaatattagcttgattgttaaggatcaagaatggatgaaattctttcattgaacttcaatagat |
283 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6178449 |
tatgttggaagtattagcttgattgttaaggattaagaatggatgaaattctttcattgaacttcaatagat |
6178520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 345 - 489
Target Start/End: Original strand, 6178582 - 6178726
Alignment:
| Q |
345 |
ccaacacgtattctcgtagccaaaatatatgttttttcaccttgaccacactattgggtatgtagttatcctttcaaatgtgtaattaataattatctcc |
444 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6178582 |
ccaacacgtattctcgtagccaaaatatgtgttttttcaccttgaccacactattgggtatgtagttatcctttcaaatgtgtaattaataattatctcc |
6178681 |
T |
|
| Q |
445 |
cataattagttttttgttcatgaaaggaaaagtggtaaacaccct |
489 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6178682 |
cataattagttttttgttcatgaaaggaaaagtggtaaacaccct |
6178726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 6171979 - 6172037
Alignment:
| Q |
203 |
tgttggtcatatgttggaaatattagcttgattgttaaggatcaagaatggatgaaatt |
261 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
6171979 |
tgttggtcatatgttggaaaaattagtttgattgttaaggattaagaatggatgaaatt |
6172037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University