View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17656_high_3 (Length: 286)
Name: NF17656_high_3
Description: NF17656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17656_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 8157791 - 8158052
Alignment:
| Q |
1 |
tcgacatcgcaacataaagtcacgacattcgccgtcgttggtggccttctgcgtagcctcttagttagcgtatggctactccatcacgagattcattatc |
100 |
Q |
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| T |
8157791 |
tcgacatcgcaacataaagtcacgacattcaccgtcgttggtggccttctgcgtagcctcttagttagcgtatggctactccatcatgagattcattatc |
8157890 |
T |
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| Q |
101 |
gaccaggttcatcacaactaaatttcttctaacttagaaatttaaattattctaaaccactagttacttactatttggttcatacctctgccatgacaca |
200 |
Q |
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| T |
8157891 |
gatcaggttcatcacaactaaatttcttctaacttagaaatttaaattattctaaaccactagttacttactatttggttcatacctctgccatgacaca |
8157990 |
T |
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| Q |
201 |
ttaatcatgagttcttatatcagttctagtcaattaattaatcttccaacacatacgacatg |
262 |
Q |
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| T |
8157991 |
ttaatcatgagttcttatatcagttctagtcaattaattaatcttccaacacatacgacatg |
8158052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 123 - 238
Target Start/End: Original strand, 53304 - 53421
Alignment:
| Q |
123 |
tttcttctaacttagaaatttaaattattct-aaaccactagttacttactattt-ggttcatacctctgccatgacacattaatcatgagttcttatat |
220 |
Q |
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|||||||||| |||||||||||||||||||| ||||||| | |||| ||||||| ||||||||||||| | | |||| ||||||||||| |||||| || |
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| T |
53304 |
tttcttctaatttagaaatttaaattattcttaaaccaccaactactcactattttggttcatacctctacaacgacatattaatcatgaattcttacat |
53403 |
T |
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| Q |
221 |
cagttctagtcaattaat |
238 |
Q |
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| T |
53404 |
caattctagtcaattaat |
53421 |
T |
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