View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17656_low_2 (Length: 385)

Name: NF17656_low_2
Description: NF17656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17656_low_2
NF17656_low_2
[»] chr2 (2 HSPs)
chr2 (20-376)||(40767035-40767391)
chr2 (201-241)||(41366101-41366141)
[»] chr7 (1 HSPs)
chr7 (201-240)||(29372772-29372811)
[»] chr4 (2 HSPs)
chr4 (204-241)||(3649701-3649738)
chr4 (263-339)||(25978487-25978565)
[»] chr8 (1 HSPs)
chr8 (201-241)||(10656692-10656732)
[»] chr5 (2 HSPs)
chr5 (201-241)||(6284295-6284335)
chr5 (197-241)||(35701332-35701376)
[»] chr1 (2 HSPs)
chr1 (201-241)||(6029367-6029407)
chr1 (201-241)||(13994141-13994181)


Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 20 - 376
Target Start/End: Original strand, 40767035 - 40767391
Alignment:
Q  20 cctacaaactttagtctatctaagagcgtgtttgatatggtaaaaagttagtaatcacgtaacagtagaagacagaacaacacatgaaagatttttaaga 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40767035 cctacaaactttagtctatctaagagcgtgtttgatatggtaaaaagttagtaatcacgtaacagtagaagacagaacaacacatgaaagatttttaagg 40767134  T
Q  120 tattaaacatctttttatctcaatgcttggtggataaaatgtcacggtattttagacaacttgtacctctnnnnnnngttatgttgtggtttagtgaggg 219  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  40767135 tattaaacatctttttgtctcaatgcttggtggataaaatgtcacggtattttagacaacttgtacctctaaaaaaagttatgttgtggtttagtgaggg 40767234  T
Q  220 acaaaaaatttagtttttgtcccctctaatttgttcaatcctagaaacagttttaaaatcaaacactataattgaagttgtctttgtttggtcccttatt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  40767235 acaaaaaatttagtttttgtcccctctaatttgttcaatcctagaaacagttttaaaatcaaacactataactgaagttgtctttgtttggtcccttgtt 40767334  T
Q  320 ttttaacatatcaaatgcaccattagagttataagaaatgataaacacattcatctc 376  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40767335 ttttaacatatcaaatgcaccgttagagttataagaaatgataaacacattcatctc 40767391  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 41366141 - 41366101
Alignment:
Q  201 tgttgtggtttagtgagggacaaaaaatttagtttttgtcc 241  Q
    ||||||||||| |||||||||||||| || |||||||||||    
T  41366141 tgttgtggtttggtgagggacaaaaatttcagtttttgtcc 41366101  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 29372811 - 29372772
Alignment:
Q  201 tgttgtggtttagtgagggacaaaaaatttagtttttgtc 240  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  29372811 tgttgtggtttagtgacggacaaaaattttagtttttgtc 29372772  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 3649701 - 3649738
Alignment:
Q  204 tgtggtttagtgagggacaaaaaatttagtttttgtcc 241  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  3649701 tgtggtttggtgagggacaaaaattttagtttttgtcc 3649738  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 339
Target Start/End: Complemental strand, 25978565 - 25978487
Alignment:
Q  263 gaaacagtttta-aaatcaaacact--ataattgaagttgtctttgtttggtcccttattttttaacatatcaaatgcac 339  Q
    |||||||||||| ||||||||||||  |||||||||||||| |||||   |||| ||||||||||||| |||||| ||||    
T  25978565 gaaacagttttacaaatcaaacactggataattgaagttgt-tttgtcatgtcctttattttttaacaaatcaaacgcac 25978487  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 10656732 - 10656692
Alignment:
Q  201 tgttgtggtttagtgagggacaaaaaatttagtttttgtcc 241  Q
    ||||||||||| |||| |||||||||||| |||||||||||    
T  10656732 tgttgtggttttgtgaaggacaaaaaattcagtttttgtcc 10656692  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 6284335 - 6284295
Alignment:
Q  201 tgttgtggtttagtgagggacaaaaaatttagtttttgtcc 241  Q
    ||||||||||| ||||||||||||||| | |||||||||||    
T  6284335 tgttgtggtttggtgagggacaaaaaaataagtttttgtcc 6284295  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 35701332 - 35701376
Alignment:
Q  197 gttatgttgtggtttagtgagggacaaaaaatttagtttttgtcc 241  Q
    ||||||||||||||| ||||||||||||||  | |||||||||||    
T  35701332 gttatgttgtggtttggtgagggacaaaaatatgagtttttgtcc 35701376  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 6029407 - 6029367
Alignment:
Q  201 tgttgtggtttagtgagggacaaaaaatttagtttttgtcc 241  Q
    ||||||||||| |||||||||||||| || |||||||||||    
T  6029407 tgttgtggtttggtgagggacaaaaatttcagtttttgtcc 6029367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 13994181 - 13994141
Alignment:
Q  201 tgttgtggtttagtgagggacaaaaaatttagtttttgtcc 241  Q
    ||||||||||| |||||||||||||| || |||||||||||    
T  13994181 tgttgtggtttggtgagggacaaaaatttcagtttttgtcc 13994141  T

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