View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17656_low_4 (Length: 242)
Name: NF17656_low_4
Description: NF17656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17656_low_4 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 6 - 242
Target Start/End: Original strand, 1140747 - 1140983
Alignment:
| Q |
6 |
cacagacgcaaaattggggctttcatgggccaggcgcgtaatgtttgcaaacttccttttttgataggggcatctcccatatgttacggtgttcctactg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1140747 |
cacagacgcaaaattggggctttcatgggccaggcgcgtaatgtttgcaaacttccttttttgataggggcatctcccgtatgttacggtgttcctactg |
1140846 |
T |
|
| Q |
106 |
gaatttggaggaaaaaggatacataaccttaccaacccaacatgaggtcgcctccacaattatatgggaacttggggcatctcccatatactaggttgta |
205 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1140847 |
gaatttggaggaaaaaggatacttaaccttaccaacccaacatgaggtcgcctccacaattatatgggaacttggggcatctcccatatactatgttgtt |
1140946 |
T |
|
| Q |
206 |
cctatggcattgaagtgcgttaaagaggttcatctac |
242 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1140947 |
cctatggcattgaagtgcattaaagaggttcatctac |
1140983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 7556076 - 7556205
Alignment:
| Q |
6 |
cacagacgcaaaattggggctttcatgggccaggcgcgtaatgtttgcaaacttccttttttgataggggcatctcccatatgttacggtgttcctactg |
105 |
Q |
| |
|
|||||||||| ||||||||||| ||||| |||||||||||| |||| |||| ||| || | |||||| |||||||||| || ||||||||||||| |
|
|
| T |
7556076 |
cacagacgcacgattggggcttttatgggtgaggcgcgtaatgcttgcgtccttcgtttcttaaatggggcagctcccatatgctatggtgttcctactg |
7556175 |
T |
|
| Q |
106 |
gaatttggaggaaaaaggatacataacctt |
135 |
Q |
| |
|
|||||| |||||||||||||| ||| |||| |
|
|
| T |
7556176 |
gaatttcgaggaaaaaggatatatagcctt |
7556205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University