View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_high_15 (Length: 390)
Name: NF17657_high_15
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 30947433 - 30947056
Alignment:
| Q |
1 |
tgagaagagagacaacaggagcaacaatgcttgaactgcaataggacgttcaatgctgccgcattcttgatgaaatctcagctaaattgccatgaattta |
100 |
Q |
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| T |
30947433 |
tgagaagagagacaacaagagcaacaatgcttgaactgcaatcggacgttcaatgctgccgcattcttgatgaaatctcagctaaattgccatgaattta |
30947334 |
T |
|
| Q |
101 |
gcatgaattgagaaaatatccttgatatttggaaccctaagacgaagattctgagacaaatgccattgattcgtgttgaatgatgaaattcgattggtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30947333 |
gcatgaattgagaaaatatccttgatatttggaaccctaagatgaagattctgagacaaatgccattgattcgtgttgaatgatgaaatttgattggtga |
30947234 |
T |
|
| Q |
201 |
tgaagatgatcgagtgttgattgggaatgtcgaagggagagaacggaaatggcgagggagaacagagagaacgaacgaaagtgaaagcgtggaaaattaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30947233 |
tgaagatgatcgagtgttgattgggaatgtcgaagggagagaacggaaatggcgagggagaacagagagaacgaacgaaagtgaaagcgtggaaaatcaa |
30947134 |
T |
|
| Q |
301 |
aagaataagaactaccggcactttgatatgtttcttacataacttcaaacttggaatttcatgtaacagcttttcttc |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30947133 |
aagaataagaactaccggcactttgatatgtttcttacataacttcaaacttggaatttcatgtaacagcttttcttc |
30947056 |
T |
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