View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_high_17 (Length: 373)
Name: NF17657_high_17
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 331
Target Start/End: Complemental strand, 22042025 - 22041710
Alignment:
| Q |
13 |
aatatcctggaggaatcaaattaatgctctatgagtttcagtaagtagcatattaacatttgaatatatttgctaattataatgcataaatttgaccaag |
112 |
Q |
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| T |
22042025 |
aatatcctggaggaatcaaattaatgctct--gagtttcagta-gtagtatattaacatttgaatatatttgataattataatgcataaatttgaccaag |
22041929 |
T |
|
| Q |
113 |
cgttatcttttaaagagcataatataggattgaaaaatatcttttacaaataataattcaagattaataaatcacaaatacaacatcaaaatagtctact |
212 |
Q |
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| T |
22041928 |
cgttatcttttaaagagcataatataggattgaaaaatctcttttacaaataataatttaagattaataaatcacaagtacaacatcaaaatagtctact |
22041829 |
T |
|
| Q |
213 |
gaatagaagctatgcagcaacattcactatctcctttacaataaccaccaccagaaaaacccatagttaccatacaaaagtggttacagaattctgaacc |
312 |
Q |
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|||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22041828 |
gaatagaagctatgcagcaacatttactatttccttcacaataaccaccaccagaaaaacccatagttaccgtacaaaagtggttacagaattctgaacc |
22041729 |
T |
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| Q |
313 |
accagcgcatctttcataa |
331 |
Q |
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|| |||||||||||||||| |
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| T |
22041728 |
actagcgcatctttcataa |
22041710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 25 - 331
Target Start/End: Original strand, 22017079 - 22017379
Alignment:
| Q |
25 |
gaatcaaattaatgctctatgagtttcagtaagtagcatattaacatttgaatatatttgctaattataatgcataaatttgaccaagcgttatctttta |
124 |
Q |
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| T |
22017079 |
gaatcaaattaatgccctatgactttcagta-gcagtagatcaacatttgaatatatttgctaattataatgcataaatttgaccaagcatga------- |
22017170 |
T |
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| Q |
125 |
aagagcataatataggattgaaaaatatcttttacaaataataattcaagattaataaatcacaaatacaacatcaaaatagtctactgaatagaagcta |
224 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
22017171 |
---agcataatataggattgaaaaatctcttttacaaataataattcaagattaataaatcacaaatacaacatcaaaatagtctactgtctggaagcta |
22017267 |
T |
|
| Q |
225 |
tgcagcaacattcacta---tctccttt---acaataaccaccaccagaaaaacccatagttaccatacaaaagtggttacagaattctgaaccaccagc |
318 |
Q |
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|||| |||||| |||| | |||||| ||||||||||||| ||| ||| ||||||||||||||||||| ||||||||||||||||||||| || | |
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| T |
22017268 |
tgcaacaacatgtactactttttcctttttcacaataaccaccatcag-gaaagccatagttaccatacaaaaatggttacagaattctgaaccaacaac |
22017366 |
T |
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| Q |
319 |
gcatctttcataa |
331 |
Q |
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||||||||||||| |
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| T |
22017367 |
gcatctttcataa |
22017379 |
T |
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