View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_high_19 (Length: 364)
Name: NF17657_high_19
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 35399748 - 35399417
Alignment:
| Q |
18 |
acccatttgacttgttgatagaaatttgggaggtcaaaccaatgaaggccttgagcaatagtcacaaggtctatggttccttgtggtgttacaatttgtt |
117 |
Q |
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| T |
35399748 |
acccatttgacttgttgatagaaatttgggaggtcaaaccaatgaaggccttgagcaatagtcacaaggtctatggttccttgtggtgttacaatttgtt |
35399649 |
T |
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| Q |
118 |
caacctcgggaatggacattgttgagggtgtgtgtttgtattgcacattagggaacttggttgcaaattcaagttgttgttcactaacatctgtagctat |
217 |
Q |
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| T |
35399648 |
caagctcgggaatggacattgttgaaggggtgtgtttgtattgcacattagggagcttggttgcaaattcaagttgttgttcactaacatctgtagcaat |
35399549 |
T |
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| Q |
218 |
gacattcttgtacaatgcagctaactgaaatcatgaaatagtttttctttgagtaaaagtgannnnnnngaaaagaattgtattatgtgtatgcgcgtgt |
317 |
Q |
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| T |
35399548 |
gacattcttgtacaatgcagctaactgaaatcatgaaatagtttttctttgagtaaaagtgatttttttgaaaagaattgtattatgtgtatgcgcgtgt |
35399449 |
T |
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| Q |
318 |
gtggaatttgacaaattataagaaacattcat |
349 |
Q |
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| T |
35399448 |
gtgaaatttgacaaattataagaaacattcat |
35399417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 35404677 - 35404440
Alignment:
| Q |
18 |
acccatttgacttgttgatagaaatttgggaggtcaaaccaatgaaggccttgagcaatagtcacaaggtctatggttccttgtggtgttacaatttgtt |
117 |
Q |
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| T |
35404677 |
acccattttacttgttgatagaaatttgggaagtcaaaccaatgaagaccttgagcaatagtcacaaggtctatggttccttgtggtgttacaatttgtt |
35404578 |
T |
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| Q |
118 |
caacctcgggaatggacattgttg-agggtgtgtgtttgtattgcacattagggaacttggttgcaaattcaagttgttgttcactaacatctgtagcta |
216 |
Q |
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||| |||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
35404577 |
caagctcgggaatggacattgttgaagggggtgtgtttgtattgcacattagggagtttggttgcaaattcaagttgttgttcactcacatctgtggcta |
35404478 |
T |
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| Q |
217 |
tgacattcttgtacaatgcagctaactgaaatcatgaa |
254 |
Q |
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| T |
35404477 |
tgacatttttgtacaatgtagctaactgaaatcatgaa |
35404440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 36209029 - 36209261
Alignment:
| Q |
18 |
acccatttgacttgttgatagaaatttgggaggtcaaaccaatgaaggccttgagcaatagtcacaaggtctatggttccttgtggtgttacaatttgtt |
117 |
Q |
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||||| || ||||||| ||||| ||| |||||||| ||| |||||| |||||||||| ||||||||||||||||||||||| |||| || ||||||| |
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| T |
36209029 |
acccaattaacttgtttgtagaaggttgagaggtcaagccagtgaagggcttgagcaatggtcacaaggtctatggttccttgaggtgacaccatttgtt |
36209128 |
T |
|
| Q |
118 |
caacctcgggaatggacattgttgagggtgtgtgtttgtattgcacattagggaacttggttgcaaattcaagttgttgttcactaacatctgtagctat |
217 |
Q |
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||| ||| | |||||||| ||||| || ||||||| |||| | |||||||| | ||||||||||||||||||||||| |||||| ||||||| ||||| |
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| T |
36209129 |
caagctcagtcatggacatggttgatggggtgtgttggtatcgtacattaggaagcttggttgcaaattcaagttgtttctcactagcatctgtggctat |
36209228 |
T |
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| Q |
218 |
gacattcttgtacaatgcagctaactgaaatca |
250 |
Q |
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| T |
36209229 |
gacattcttgtacagtgtacttaactgaaatca |
36209261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 132 - 250
Target Start/End: Original strand, 36206181 - 36206299
Alignment:
| Q |
132 |
gacattgttgagggtgtgtgtttgtattgcacattagggaacttggttgcaaattcaagttgttgttcactaacatctgtagctatgacattcttgtaca |
231 |
Q |
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||||| ||||| || ||||||| |||| |||||||| | | | |||||||||||||||||||| |||||| |||| ||||||| ||||| ||||||| |
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| T |
36206181 |
gacatggttgatggggtgtgttggtatcgcacattatgaagcaaggttgcaaattcaagttgtttctcactagcatcggtagctactacattgttgtaca |
36206280 |
T |
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| Q |
232 |
atgcagctaactgaaatca |
250 |
Q |
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||| ||||||||||||||| |
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| T |
36206281 |
atgtagctaactgaaatca |
36206299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 36205943 - 36206062
Alignment:
| Q |
18 |
acccatttgacttgttgatagaaatttgggaggtcaaaccaatgaaggccttgagcaatagtcacaaggtctatggttccttgtggtgttacaatttgtt |
117 |
Q |
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| T |
36205943 |
acccaattgacttgcttgtagaaggttgagaggtcaaaccagtgaagagcttgagcaatggtgacaaggtctatggttccttgagatgacaccatttgtt |
36206042 |
T |
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| Q |
118 |
caacctcgggaatggacatt |
137 |
Q |
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||| ||| | ||||||||| |
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| T |
36206043 |
caagctcagccatggacatt |
36206062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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