View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_high_23 (Length: 350)
Name: NF17657_high_23
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 17170562 - 17170228
Alignment:
| Q |
1 |
gtcttggttgttgctagagaagttcataaaaaatttagtactataaaaaagtgagacttattggtatttctggatcaaagttgaaactcactgatatgga |
100 |
Q |
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| T |
17170562 |
gtcttggttgttgctagagaagttcataaaaaatttagtactataaaaaagtgagacttattggtatttctggatcaaagtagaaactcactcatatgga |
17170463 |
T |
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| Q |
101 |
tactccattgttgattaaaagctttacttcagaaaatgattacttacctttgaaaaacttgaaagatgtgaaatatgttttgtggaatgagacattgaag |
200 |
Q |
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| T |
17170462 |
aacaccattgttgattaaaagctttacttcagaaaatgattacttacctttgaaaaacttgaaagatgtgaaatatgttttgtggaatgagacattgaag |
17170363 |
T |
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| Q |
201 |
atatggaagatagcaattccagtggctttgtgtttactttttcagaacctaattggctcttcaaatttcatctatgctggtcatattggtgatattcagc |
300 |
Q |
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| T |
17170362 |
atatggaagatagcaattccagtggctttgtctttactttttcagaacctaattggctcttcaaatttcatctatgctggtcatattggtgatattcagc |
17170263 |
T |
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| Q |
301 |
tctcttcttactctgtgtatcaaagtgtcatcatt |
335 |
Q |
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| T |
17170262 |
tctcttcttactctgtgtatcaaagtgtcatcatt |
17170228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 90 - 245
Target Start/End: Complemental strand, 17143807 - 17143652
Alignment:
| Q |
90 |
actgatatggatactccattgttgattaaaagctttacttcagaaaatgattacttacctttgaaaaacttgaaagatgtgaaatatgttttgtggaatg |
189 |
Q |
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| T |
17143807 |
actgatatggaaacaccattgttaatcaaaagctttacttcagaaaatgattacttggcagtgaaaagtttgaaggatgttaaacatgttttgtggagtg |
17143708 |
T |
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| Q |
190 |
agacattgaagatatggaagatagcaattccagtggctttgtgtttactttttcag |
245 |
Q |
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| T |
17143707 |
agacagtgaagatatggaagatagcacttccagtggccttgtgttcactgtttcag |
17143652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 94 - 329
Target Start/End: Complemental strand, 17155974 - 17155739
Alignment:
| Q |
94 |
atatggatactccattgttgattaaaagctttacttcagaaaatgattacttacctttgaaaaacttgaaagatgtgaaatatgttttgtggaatgagac |
193 |
Q |
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| T |
17155974 |
atatggaaacaccattgctgaccaaaagatttacttcagaaaatgattacttggcagtgaaaagtttgaaggatgttaaacatgttttgtggagtgagac |
17155875 |
T |
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| Q |
194 |
attgaagatatggaagatagcaattccagtggctttgtgtttactttttcagaacctaattggctcttcaaatttcatctatgctggtcatattggtgat |
293 |
Q |
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| T |
17155874 |
agtgaagatatggaagatagcacttccagtggctttgtgttatttgtttcaatacctcacaaacacttcaacttccatctatgctggtcatcttggagat |
17155775 |
T |
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| Q |
294 |
attcagctctcttcttactctgtgtatcaaagtgtc |
329 |
Q |
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| T |
17155774 |
attgaactctcttctttctctctttttcaaagtgtc |
17155739 |
T |
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