View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17657_high_25 (Length: 338)

Name: NF17657_high_25
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17657_high_25
NF17657_high_25
[»] chr8 (1 HSPs)
chr8 (41-332)||(41308562-41308855)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 41 - 332
Target Start/End: Original strand, 41308562 - 41308855
Alignment:
Q  41 tttcgaaccggattctctcaaatattcaatcatgtaattaaaacataatgtatcattaatctcatttatatagtttcgtccnnnnnnnnttaatttttat 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||    
T  41308562 tttcgaaccggattctctcaaatattcaatcatgtaattaaaacataatgtatcattaatctcatttatatagtttcgtccaaaaaaaattaatttttat 41308661  T
Q  141 aatacaaatcatctttattctaattatactacaagtaattatatatcacaagaacaa-tcaacataaaa-aataaatgctaagatgctaaacactcgtat 238  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  41308662 aatacaaatcacctttattctaattatactacaagtaattatatatcacaagaacaaatcaacataaaaaaataaatgctaagatgctaaacactcgtat 41308761  T
Q  239 aattttgaacggacaaggactttctatcttttttgaaggaaaaagtagagtgattttagacaaaattaagataaactataagagatgatgatgt 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41308762 aattttgaacggacaaggactttctatcttttttgaaggaaaaagtagagtgattttagacaaaattaagataaactataagagatgatgatgt 41308855  T

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