View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17657_high_27 (Length: 330)
Name: NF17657_high_27
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_high_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 318
Target Start/End: Original strand, 47713679 - 47713994
Alignment:
| Q |
11 |
gaagaagaagtcaagacatgggttgcaagtagtgagatatgttggtgacatgttttctgttaaagtcattggtgggttttggtttgtatgaagggtgttg |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47713679 |
gaagaagaagtcaagacatgggttgccagtagtgagatatgttggtgacatgttttctgttagagtcattggtgggttttggtttgtatgaagggtgttg |
47713778 |
T |
|
| Q |
111 |
aaatttgttaccatttgatcgatggaagttttgttagtggtggcggtgacggtggtgtataactcgggtgggccaacgagtgtggtggcggtggccatag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47713779 |
aaatttgttaccatttgatcgatggaagttttgttagtggtggcggtgacggtggtgtataactcgggtgggccaacgagtgtggtggcggtggccatag |
47713878 |
T |
|
| Q |
211 |
ttgtgatgagaaaaatgaggagatttggattgttagggttaaaggagaaggttgtgagaataagaagttg---------atatttattgaacgatatgcg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
47713879 |
ttgtgatgagaaaaatgaggagatttggattgctagggttaaaggagaaggttgtgagaat-agaagttgattttgataatatttattgaacgatatgcg |
47713977 |
T |
|
| Q |
302 |
tgggcaccaagtacttg |
318 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
47713978 |
tgggcaccaagtacttg |
47713994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University