View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17657_high_35 (Length: 291)
Name: NF17657_high_35
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_high_35 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 36263892 - 36264165
Alignment:
| Q |
1 |
gtgaccggagcaataacagttaactggtacagtaatcatggtgtccgtcggaataggatcaacatatgagatgttgttggcattggctattagagggact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36263892 |
gtgaccggagcaataacagttaactggtacagtaatcatggtgtccgtcggaataggatcaacatatgagatgttgttggcattggcaattagagggact |
36263991 |
T |
|
| Q |
101 |
gatgagttcaagagataagctatggtggctggagtgttgtaatgaggagggcttgatttgaaggtgaggtaagattgacaggagttgatgctgttgcaga |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36263992 |
gttgagttcaagagataagctatggtggctggagtgttgtaatgaggagggcttgatttgaaggtgaggtaagattgacaggagttgatgctgttgcaga |
36264091 |
T |
|
| Q |
201 |
tattaccatatgtagatttggaagggtcatcacaatctagttgatggttgtctagatattcttgctgagatttt |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36264092 |
tattaccatatgtagatttggaagggtcatcacaatctagttgatggttgtctagatattcttgctgagatttt |
36264165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 36256146 - 36256388
Alignment:
| Q |
18 |
agttaactggtacagtaatcatggtgtccgtcggaataggatcaacatatgagatgttgttggcattggctattagagggactgatgagttcaagagata |
117 |
Q |
| |
|
|||| ||||| ||||| |||| |||||| ||||||||||| || ||| |||||| |||||||||||||||| |||||||||| |||||| ||||||| |
|
|
| T |
36256146 |
agtttactgggacagtgatcacggtgtcagtcggaatagggtctccatctgagataatgttggcattggctatgagagggactgtggagttcgagagata |
36256245 |
T |
|
| Q |
118 |
agcta-----tggtggctggagtgttgtaatgaggagggcttgatttgaaggtgaggtaagattgacaggagttgatgctgttgcagatattaccatatg |
212 |
Q |
| |
|
|| || |||||| |||||||||||| ||||||||| |||||||||| |||||||| |||||||| ||||||||||||| |
|
|
| T |
36256246 |
agataagctgtggtggttggagtgttgtattgaggagggtttgatttgaatgtgaggta-------------------ctgttgcaaatattaccatatg |
36256326 |
T |
|
| Q |
213 |
tagatttggaagggtcatcacaatctagttgatggttgtctagatattcttgctgagatttt |
274 |
Q |
| |
|
|| | ||||| ||| ||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
36256327 |
tataattggaggggacatcacaatctagttgaaagttgtctagatagtcttgctgagatttt |
36256388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University