View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_high_50 (Length: 252)
Name: NF17657_high_50
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_high_50 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 54805449 - 54805216
Alignment:
| Q |
14 |
tcagttcataacttaatctgaattttgattccaattggtctcagtttctgtacgtttttaagttcgtgaggcaatattccgtctcagtttttgagaatta |
113 |
Q |
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| T |
54805449 |
tcagttcataacttaatctgaattttgattccaattggtctcagtttctgtacgtttttaagttcgtgaggcaatattccttctcagtttttgagaatta |
54805350 |
T |
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| Q |
114 |
ttgctaatttcaattctcccatatgtgtttctggttacctatat-aaatttactgaaataattttccttggtcctctccctttctaatgatgctcagcta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
54805349 |
ttgctaatttcaattctcccatatgtgtttctggttacctatatgaattttactgaaataattttccttggtccactccctttctaatgatgctcagcta |
54805250 |
T |
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| Q |
213 |
caccatatttaagaacgtttttaattcatctcac |
246 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
54805249 |
caccatatttaagaacgtttttaattcatatcac |
54805216 |
T |
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