View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17657_high_56 (Length: 238)

Name: NF17657_high_56
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17657_high_56
NF17657_high_56
[»] chr1 (4 HSPs)
chr1 (21-238)||(11686503-11686720)
chr1 (21-238)||(11690515-11690732)
chr1 (23-238)||(11635086-11635298)
chr1 (23-238)||(11627304-11627519)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 11686720 - 11686503
Alignment:
Q  21 cgatttaaaagttcgggaaatggaaagagatattaatccaagaccaagagcatttttggaaagtttagatgatgtgaaactgcattttggccgtcagatc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11686720 cgatttaaaagttcgggaaatggaaagagatattaatccaagaccaagagcatttttggaaagtttagatgatgtgaaactgcattttggctgtcagatc 11686621  T
Q  121 tcaaaggaaagattctctgcattatggagagaggtggatgttagtgttgaatttggcattggaatgagaaagtggcgattctctatgcgccatcatgata 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11686620 tcaaaggaaagattctctgcattatggagagaggtggatgttagtgttgaatttggcattggaatgagaaagtggcgattctctatgcgccatcatgata 11686521  T
Q  221 agaagttcaaacttgagc 238  Q
    ||||||||||||||||||    
T  11686520 agaagttcaaacttgagc 11686503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 11690732 - 11690515
Alignment:
Q  21 cgatttaaaagttcgggaaatggaaagagatattaatccaagaccaagagcatttttggaaagtttagatgatgtgaaactgcattttggccgtcagatc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11690732 cgatttaaaagttcgggaaatggaaagagatattaatccaagaccaagagcatttttggaaagtttagatgatgtgaaactgcattttggctgtcagatc 11690633  T
Q  121 tcaaaggaaagattctctgcattatggagagaggtggatgttagtgttgaatttggcattggaatgagaaagtggcgattctctatgcgccatcatgata 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11690632 tcaaaggaaagattctctgcattatggagagaggtggatgttagtgttgaatttggcattggaatgagaaagtggcgattctctatgcgccatcatgata 11690533  T
Q  221 agaagttcaaacttgagc 238  Q
    ||||||||||||||||||    
T  11690532 agaagttcaaacttgagc 11690515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 23 - 238
Target Start/End: Original strand, 11635086 - 11635298
Alignment:
Q  23 atttaaaagttcgggaaatggaaagagatattaatccaagaccaagagcatttttggaaagtttagatgatgtgaaactgcattttggccgtcagatctc 122  Q
    ||||||||||| ||||| |||||||||||||| ||||||  ||||| ||||| ||||| |||||||| ||||| |||||| |||||||| ||||||||||    
T  11635086 atttaaaagttagggaattggaaagagatattgatccaaagccaagggcattcttggacagtttagacgatgttaaactgtattttggctgtcagatctc 11635185  T
Q  123 aaaggaaagattctctgcattatggagagaggtggatgttagtgttgaatttggcattggaatgagaaagtggcgattctctatgcgccatcatgataag 222  Q
    ||||||||||||||||  ||||||||   ||||||||| |||||| || ||||| ||||| ||||||||||||||||||||||||| |||| |  |||||    
T  11635186 aaaggaaagattctctaaattatgga---aggtggatgctagtgtagattttgggattggtatgagaaagtggcgattctctatgcaccatgaaaataag 11635282  T
Q  223 aagttcaaacttgagc 238  Q
    ||||||||||||||||    
T  11635283 aagttcaaacttgagc 11635298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 23 - 238
Target Start/End: Original strand, 11627304 - 11627519
Alignment:
Q  23 atttaaaagttcgggaaatggaaagagatattaatccaagaccaagagcatttttggaaagtttagatgatgtgaaactgcattttggccgtcagatctc 122  Q
    ||||||||||||||||||||||||||||||||  || ||| ||||| | | ||||| | |||||  |||||||||||||| ||||| || |||| |||||    
T  11627304 atttaaaagttcgggaaatggaaagagatattgttcgaaggccaagggaaattttgcacagtttgaatgatgtgaaactgtatttttgctgtcaaatctc 11627403  T
Q  123 aaaggaaagattctctgcattatggagagaggtggatgttagtgttgaatttggcattggaatgagaaagtggcgattctctatgcgccatcatgataag 222  Q
    | |||||||||| ||||  ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| || || ||||| |  |||||    
T  11627404 agaggaaagattatctgttttatggagagaggtggatgttagagttgattttgggattggaatgagaaagtggcgattcactttgtgccatgacaataag 11627503  T
Q  223 aagttcaaacttgagc 238  Q
    |  |||||||||||||    
T  11627504 acattcaaacttgagc 11627519  T

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