View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17657_high_9 (Length: 460)
Name: NF17657_high_9
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 18 - 449
Target Start/End: Complemental strand, 6180632 - 6180190
Alignment:
| Q |
18 |
gatctttctttgcacatgtacaaagattgcttnnnnnnnnncactgaaagaaaagggtccctgctttattttactcttcttttttgtgtgaaga------ |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6180632 |
gatctttctttgcacatgtacaaagattgcttaaaaataaacaccgaaagaaaagggtccctgctttattttactcttcttttttgtgtgaagagaatat |
6180533 |
T |
|
| Q |
112 |
-------------ctgcgacgattaattcttcgagcctgataagactataatagacggcaaatttatgaaactgaatttgaatccatgatatgtggttaa |
198 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6180532 |
actctttgcatgactgcgacgattaattcttcgagcttgataagactataatagacggcaaatttatgaaactgaatttgaatccatgatatgtggttaa |
6180433 |
T |
|
| Q |
199 |
actagatgagactcttattagtccatgttctcttggataacactcttttaatgagtttggtgaagtaagtatctcatccaatcatgttatatcannnnnn |
298 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6180432 |
gctagaagagactcgtattagtccatgttctcttggataacac---------gagtttggtgaagtaagtatctcatccaatcatgttatatcatttttt |
6180342 |
T |
|
| Q |
299 |
naaa-tatcttctaaagcaaatttaaatttggagttattttacccaacacaactgcttccttatatcaaggaattttccttattttatttatctcaagta |
397 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6180341 |
taaaatttcttctaaagcaaatttaaatttggagttattttacccaacacaactccttccttatatcaaggaattttccttattttatttatctcaagta |
6180242 |
T |
|
| Q |
398 |
aagtttcttgtctgtgatagatctaagcattctgtttttgtctttggtctgt |
449 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6180241 |
aagtttcttgtccgtgatagatctaagcattctgtttttgtctttggtctgt |
6180190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 220 - 338
Target Start/End: Complemental strand, 6146138 - 6146020
Alignment:
| Q |
220 |
tccatgttctcttggataacactcttttaatgagtttggtgaagtaagtatctcatccaatcatgttatatcannnnnnnaaatatcttctaaagcaaat |
319 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| |||||||||||| | |||||||||| ||||||||| ||||| ||||||||| |||||||||| |
|
|
| T |
6146138 |
tccatgttctcttgggtaatactcttttaataagtttggtgaagcaggtatctcatctaatcatgttgtatcattttctaaaatatcttgtaaagcaaat |
6146039 |
T |
|
| Q |
320 |
ttaaatttggagttatttt |
338 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
6146038 |
ttaaatttggagttatttt |
6146020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University