View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_low_10 (Length: 463)
Name: NF17657_low_10
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 13 - 444
Target Start/End: Original strand, 32392476 - 32392907
Alignment:
| Q |
13 |
aaacaagtttatgaatgtggacccaaatccaaccaatgatattgtatttactagtaaaattagtactataacatatcatgtgtttcatgaaaagaaatct |
112 |
Q |
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| T |
32392476 |
aaacaagtttatgaatgtggacccaaatccaacatatgatattgtatttacttgtaaaattagtactataacatatcatgtgtttcatgaaaagaagtct |
32392575 |
T |
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| Q |
113 |
atgcatgtggacgcaaatccaaccaagtgaacctgtatcaannnnnnnctaagtaatataaatggatggtaacataagaaatgctaatgtaaccaactcc |
212 |
Q |
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| T |
32392576 |
atgcatgtggacgcaaatccaaccaaatgaacctgtatcaatttttttccaagtaatataaatggatggtaacataagaaatgctaatgtaaccaactcc |
32392675 |
T |
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| Q |
213 |
acctttccttctcaaactctccaccataatttcaccaccgtctgccggaatgtcaccgtctaccggagtccatatccctctattgaccggatcaaaattg |
312 |
Q |
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| T |
32392676 |
acctttccttctcaaactctccaccataatttcaccaccgtctgccggaatgtcaccgtctaccggagtccacatccctctattgaccggatcaaaattg |
32392775 |
T |
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| Q |
313 |
gcgccggcgccaggtaccatccccggcgccgtgctcaatgtcgccacaagcattattggttctggaatcatgtccattccggcaattctaaaagttcttg |
412 |
Q |
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| T |
32392776 |
gcgccggcgcccggtaccatccccggcgccgtgctcaatgtcgccacaagcattattggttctggaatcatgtccattccggcaattctaaaagttcttg |
32392875 |
T |
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| Q |
413 |
gagtgtttcccgcccttgccttaattctaatc |
444 |
Q |
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| T |
32392876 |
gagtgtttcccgcccttgccttaattctaatc |
32392907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 266 - 410
Target Start/End: Original strand, 32394788 - 32394932
Alignment:
| Q |
266 |
caccgtctaccggagtccatatccctctattgaccggatcaaaattggcgccggcgccaggtaccatccccggcgccgtgctcaatgtcgccacaagcat |
365 |
Q |
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|||||||| |||||||||| | ||||| |||||||||||||| |||| ||| || ||| | |||||||| ||||| ||||||||||||| ||||| |
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| T |
32394788 |
caccgtctgccggagtccacgttcctctcttgaccggatcaaatccggcggcggttcctggttcaatccccggtgccgtattcaatgtcgccaccagcat |
32394887 |
T |
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| Q |
366 |
tattggttctggaatcatgtccattccggcaattctaaaagttct |
410 |
Q |
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| T |
32394888 |
aattggctccggaatcatgtcaattccggcgattctcaaagttct |
32394932 |
T |
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