View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17657_low_12 (Length: 457)
Name: NF17657_low_12
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 13 - 427
Target Start/End: Original strand, 55247294 - 55247713
Alignment:
| Q |
13 |
aatatggttgtataaatatcattattcgactttaaaatatgttgagaaatgttatgaacannnnnnnctaacattttgtctaacgattactcttttatca |
112 |
Q |
| |
|
|||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||| |
|
|
| T |
55247294 |
aatatgattgtacaaatattattattcgactttaaaatatgttgagaaatgttatgaacatttttttttaatattttctctaacgattactcttttatca |
55247393 |
T |
|
| Q |
113 |
aggaaactcatgcgaacctcatcacgttatgtgaaactcatttatacttcgtaaaaagaggacatgaatagaatatccatattcctaaaagtgaatgttt |
212 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
55247394 |
aggaaactcatgtgaacctcatcacgttatgtgaaactcatttatacttcgtaaaaagaggacatgagtagaatatccatattcttaaaagtgaatgttt |
55247493 |
T |
|
| Q |
213 |
gttaatttattcaatattttgtaaataaaattttcctttaataagtttttgataggtacatcccacac----ttaataggtattctcca-nnnnnnnnnn |
307 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
55247494 |
gttcatttattcaatattttgtaaataaaattttcctttaataagtttttgataggtacatcccacacttaattaataggtattctccattttttttttt |
55247593 |
T |
|
| Q |
308 |
nnnnaattctcatattgtcatgtatggtcgtaaacaaaaatgtttggttgcaaacaatttacgagtgagcaccactatttatcaagatgtaaattgtctt |
407 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
55247594 |
ttttaattctcacattgtcatgtatggtcgtaaacaaaaatgtttggttgcaaacaatttacgagtgagcaccgctatttatcaagatgtaaattgtcct |
55247693 |
T |
|
| Q |
408 |
gatcacattgtgaatagtaa |
427 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
55247694 |
gatcacattgtgaatagtaa |
55247713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University