View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17657_low_13 (Length: 428)

Name: NF17657_low_13
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17657_low_13
NF17657_low_13
[»] chr2 (1 HSPs)
chr2 (154-415)||(39985006-39985267)
[»] chr3 (9 HSPs)
chr3 (38-157)||(1259635-1259754)
chr3 (38-157)||(37242923-37243042)
chr3 (38-157)||(34872965-34873084)
chr3 (46-157)||(41639066-41639178)
chr3 (46-126)||(41638488-41638568)
chr3 (46-152)||(44445498-44445605)
chr3 (46-79)||(1258673-1258706)
chr3 (46-79)||(34873694-34873727)
chr3 (49-132)||(46993332-46993415)
[»] chr5 (5 HSPs)
chr5 (46-157)||(3135931-3136042)
chr5 (46-93)||(27645843-27645890)
chr5 (99-157)||(3136467-3136525)
chr5 (69-157)||(25074964-25075052)
chr5 (69-157)||(25132933-25133021)
[»] chr7 (3 HSPs)
chr7 (38-157)||(31235087-31235206)
chr7 (46-94)||(41236797-41236845)
chr7 (46-79)||(31234124-31234157)
[»] chr6 (2 HSPs)
chr6 (52-157)||(18246889-18246998)
chr6 (46-79)||(18246185-18246218)
[»] chr8 (5 HSPs)
chr8 (90-157)||(2319313-2319380)
chr8 (46-132)||(10382039-10382125)
chr8 (46-157)||(9484273-9484384)
chr8 (46-79)||(2320222-2320255)
chr8 (69-157)||(43433842-43433930)
[»] chr4 (4 HSPs)
chr4 (38-116)||(16984326-16984404)
chr4 (50-157)||(51288908-51289015)
chr4 (46-148)||(52720605-52720707)
chr4 (112-157)||(16989304-16989349)
[»] chr1 (4 HSPs)
chr1 (38-84)||(41466213-41466259)
chr1 (38-84)||(45320456-45320502)
chr1 (46-93)||(41465244-41465291)
chr1 (44-84)||(35972602-35972642)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 154 - 415
Target Start/End: Complemental strand, 39985267 - 39985006
Alignment:
Q  154 ttttgtttttatcaaatgaatgaagcatcaatttttggtttgtgttggtggagccagagggtctcaccaacaagtgaagaaattatgaaaaaagagaaaa 253  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39985267 ttttgattttatcaaatgaatgaagcatcaatttttggtttgtgttggtggagccagagggtctcaccaacaagtgaagaaattatgaaaaaagagaaaa 39985168  T
Q  254 gataaagctaaggacaaagcaaataacaagtgtgggttctgttactatcctaccttgtccccccacccannnnnnnnnnnnnnnnnnnnnacaagtacaa 353  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||                     ||||||||||    
T  39985167 gataaagctaaggacaaagcaaataacaagtgtgtgttctgttactatcctaccttgtccccccacccaacacacactcacacacacacaacaagtacaa 39985068  T
Q  354 aagccactcacaaaattaacttttgattcaattgtctattccttttcctgttccttcttctc 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39985067 aagccactcacaaaattaacttttgattcaattgtctattccttttcctgttccctcttctc 39985006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 38 - 157
Target Start/End: Complemental strand, 1259754 - 1259635
Alignment:
Q  38 ggtggttgttcacatgggaaggtataaaaccttcccaccatgagaaaatttgttttagccattagattaatttgaaaacaccatcttatcatacacttgt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1259754 ggtggttgttcacatgggaaggtataaaaccttcccaccatgagaaaatttgttttagccattagattaatttgaaaacaccatcttatcatacacttgt 1259655  T
Q  138 aacactggattatttctttt 157  Q
    ||||||||||||||||||||    
T  1259654 aacactggattatttctttt 1259635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 38 - 157
Target Start/End: Complemental strand, 37243042 - 37242923
Alignment:
Q  38 ggtggttgttcacatgggaaggtataaaaccttcccaccatgagaaaatttgttttagccattagattaatttgaaaacaccatcttatcatacacttgt 137  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37243042 ggtggttgttcacatgggaaggtataaaaccttcccaccatgggaaaatttgttttagccattagattaatttgaaaacaccatcttatcatacacttgt 37242943  T
Q  138 aacactggattatttctttt 157  Q
    ||||||||||||||||||||    
T  37242942 aacactggattatttctttt 37242923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 38 - 157
Target Start/End: Original strand, 34872965 - 34873084
Alignment:
Q  38 ggtggttgttcacatgggaaggtataaaaccttcccaccatgagaaaatttgttttagccattagattaatttgaaaacaccatcttatcatacacttgt 137  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34872965 ggtggctgttcacatgggaaggtataaaaccttcccaccatgggaaaatttgttttagccattagattaatttggaaacaccatcttatcatacacttgt 34873064  T
Q  138 aacactggattatttctttt 157  Q
    ||||||| ||||||||||||    
T  34873065 aacactgtattatttctttt 34873084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 46 - 157
Target Start/End: Complemental strand, 41639178 - 41639066
Alignment:
Q  46 ttcacatgggaaggtat-aaaaccttcccaccatgagaaaatttgttttagccattagattaatttgaaaacaccatcttatcatacacttgtaacactg 144  Q
    ||||||||| ||||| | ||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||  ||||||| |||||||     
T  41639178 ttcacatggtaaggttttaaaaccttcccaccatgggaaaatttattttagccattagattaatttgagaacacaatcttatggtacacttctaacacta 41639079  T
Q  145 gattatttctttt 157  Q
    |||||||||||||    
T  41639078 gattatttctttt 41639066  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 41638488 - 41638568
Alignment:
Q  46 ttcacatgggaaggtataaaaccttcccaccatgagaaaatttgttttagccattagattaatttgaaaacaccatcttat 126  Q
    ||||||||||||||| ||||||||||||| |||| |||||||| ||||||||||||||| ||||||| ||||| |||||||    
T  41638488 ttcacatgggaaggtgtaaaaccttcccatcatgggaaaatttattttagccattagatcaatttgagaacacaatcttat 41638568  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 44445498 - 44445605
Alignment:
Q  46 ttcacatgggaaggtataaaaccttcccaccatgagaaaatttgttttagccatta-gattaatttgaaaacaccatcttatcatacacttgtaacactg 144  Q
    ||||||||||||| |||||||||||||||||||| |||||||   |||| |||||| ||| |||   | ||||| ||||||||||||||||  ||||||     
T  44445498 ttcacatgggaagatataaaaccttcccaccatgggaaaattcactttaaccattaggatcaatggaagaacacaatcttatcatacacttccaacacta 44445597  T
Q  145 gattattt 152  Q
     |||||||    
T  44445598 cattattt 44445605  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 1258673 - 1258706
Alignment:
Q  46 ttcacatgggaaggtataaaaccttcccaccatg 79  Q
    ||||||||||||||||||||||||||||||||||    
T  1258673 ttcacatgggaaggtataaaaccttcccaccatg 1258706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 34873727 - 34873694
Alignment:
Q  46 ttcacatgggaaggtataaaaccttcccaccatg 79  Q
    ||||||||||||||||||||||||||||||||||    
T  34873727 ttcacatgggaaggtataaaaccttcccaccatg 34873694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 46993332 - 46993415
Alignment:
Q  49 acatgggaaggtataaaaccttcccaccatgagaaaatttgttttagccattagattaatttgaaaacaccatcttatcataca 132  Q
    ||||||||| || |||||| |||||||||||  ||| ||   |||||||||||||||||| ||  ||||| |||||||||||||    
T  46993332 acatgggaaagtgtaaaactttcccaccatggaaaagttcactttagccattagattaatctgggaacacaatcttatcataca 46993415  T

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Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 46 - 157
Target Start/End: Original strand, 3135931 - 3136042
Alignment:
Q  46 ttcacatgggaaggtataaaaccttcccaccatgagaaaatttgttttagccattagattaatttgaaaacaccatcttatcatacacttgtaacactgg 145  Q
    |||||||||||||||||||||||||||||||||| |||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3135931 ttcacatgggaaggtataaaaccttcccaccatgggaaagtttattttagccactagattaatttgaaaacaccatcttatcatacacttgtaacactgg 3136030  T
Q  146 attatttctttt 157  Q
    ||||||||||||    
T  3136031 attatttctttt 3136042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 27645843 - 27645890
Alignment:
Q  46 ttcacatgggaaggtataaaaccttcccaccatgagaaaatttgtttt 93  Q
    ||||||||||||||| ||||||||||||||||||| ||| ||||||||    
T  27645843 ttcacatgggaaggtgtaaaaccttcccaccatgaaaaagtttgtttt 27645890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 3136525 - 3136467
Alignment:
Q  99 ttagattaatttgaaaacaccatcttatcatacacttgtaacactggattatttctttt 157  Q
    |||||||||||||| ||||| || |||||||||||||  ||||||| ||||||||||||    
T  3136525 ttagattaatttgagaacacaattttatcatacacttccaacactgaattatttctttt 3136467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 157
Target Start/End: Complemental strand, 25075052 - 25074964
Alignment:
Q  69 ttcccaccatgagaaaatttgttttagccattagattaatttgaaaacaccatcttatcatacacttgtaacactggattatttctttt 157  Q
    ||||||||||| |||| ||   |||||||||||||||||||  | ||||| ||| |||  |||||||  |||||| |||||||||||||    
T  25075052 ttcccaccatgggaaagttaactttagccattagattaattgaagaacacaatcatatggtacactttcaacactagattatttctttt 25074964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 157
Target Start/End: Complemental strand, 25133021 - 25132933
Alignment:
Q  69 ttcccaccatgagaaaatttgttttagccattagattaatttgaaaacaccatcttatcatacacttgtaacactggattatttctttt 157  Q
    ||||||||||| |||| ||   |||||||||||||||||||  | ||||| ||| |||  |||||||  |||||| |||||||||||||    
T  25133021 ttcccaccatgggaaagttaactttagccattagattaattgaagaacacaatcatatggtacactttcaacactagattatttctttt 25132933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 38 - 157
Target Start/End: Complemental strand, 31235206 - 31235087
Alignment:
Q  38 ggtggttgttcacatgggaaggtataaaaccttcccaccatgagaaaatttgttttagccattagattaatttgaaaacaccatcttatcatacacttgt 137  Q
    ||||| |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31235206 ggtggctgttcacatgggaaggtataaaaccttcccaccatagaaaaatttgttttagccattagattaatttgaaaacaccatcttatcatacacttgt 31235107  T
Q  138 aacactggattatttctttt 157  Q
    || | || ||||||||||||    
T  31235106 aatattgaattatttctttt 31235087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 41236797 - 41236845
Alignment:
Q  46 ttcacatgggaaggtataaaaccttcccaccatgagaaaatttgtttta 94  Q
    ||||||||||||||| |||||||||||||||||| ||||  ||||||||    
T  41236797 ttcacatgggaaggtgtaaaaccttcccaccatgggaaatgttgtttta 41236845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 31234124 - 31234157
Alignment:
Q  46 ttcacatgggaaggtataaaaccttcccaccatg 79  Q
    |||| |||||||||||||||||||||||||||||    
T  31234124 ttcatatgggaaggtataaaaccttcccaccatg 31234157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 52 - 157
Target Start/End: Complemental strand, 18246998 - 18246889
Alignment:
Q  52 tgggaaggtataaaaccttcccaccatgagaaaatttgttttagccattagattaatttgaaaacaccatc----ttatcatacacttgtaacactggat 147  Q
    |||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  18246998 tgggaaggtataaaaccttcccaccatagaaaaatttgttttagccattagattaatttgaaaacaccatcttaattatcatacacttgtaacactggat 18246899  T
Q  148 tatttctttt 157  Q
    | ||| ||||    
T  18246898 tttttttttt 18246889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 18246185 - 18246218
Alignment:
Q  46 ttcacatgggaaggtataaaaccttcccaccatg 79  Q
    |||||||||||||||||||||| |||||||||||    
T  18246185 ttcacatgggaaggtataaaactttcccaccatg 18246218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 90 - 157
Target Start/End: Original strand, 2319313 - 2319380
Alignment:
Q  90 ttttagccattagattaatttgaaaacaccatcttatcatacacttgtaacactggattatttctttt 157  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2319313 ttttagtcattagattaatttgaaaacaccatcttatcatacacttgtaacactggattatttctttt 2319380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 10382039 - 10382125
Alignment:
Q  46 ttcacatgggaaggtataaaaccttcccaccatgagaaaatttgttttagccattagattaatttgaaaacaccatcttatcataca 132  Q
    |||||||| ||||||||||||| ||||||| ||| |||| |||  |||||   |||||||||||||||||||| ||||||| |||||    
T  10382039 ttcacatgcgaaggtataaaacattcccactatgggaaagtttactttagttgttagattaatttgaaaacacaatcttattataca 10382125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 157
Target Start/End: Original strand, 9484273 - 9484384
Alignment:
Q  46 ttcacatgggaaggtataaaaccttcccaccatgagaaaatttgttttagccattagattaatttgaaaacaccatcttatcatacacttgtaacactgg 145  Q
    ||||||| |||||||||||||| |||||||||| | |||||||  |||| |||||| ||||| |  | |||||  | |||||||||||||  || ||| |    
T  9484273 ttcacattggaaggtataaaacattcccaccataaaaaaatttactttaaccattaaattaaatgaagaacacagttttatcatacactttcaatactag 9484372  T
Q  146 attatttctttt 157  Q
    ||||||||||||    
T  9484373 attatttctttt 9484384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 2320255 - 2320222
Alignment:
Q  46 ttcacatgggaaggtataaaaccttcccaccatg 79  Q
    ||||||||||||||||||||||||||||||||||    
T  2320255 ttcacatgggaaggtataaaaccttcccaccatg 2320222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 157
Target Start/End: Original strand, 43433842 - 43433930
Alignment:
Q  69 ttcccaccatgagaaaatttgttttagccattagattaatttgaaaacaccatcttatcatacacttgtaacactggattatttctttt 157  Q
    ||||||||||| |||| ||   |||||||||||||| ||||  | ||||| ||||||||||| ||||  ||||||  ||||||||||||    
T  43433842 ttcccaccatgggaaagttcactttagccattagatgaattgaagaacacaatcttatcatagacttccaacactatattatttctttt 43433930  T

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Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 16984326 - 16984404
Alignment:
Q  38 ggtggttgttcacatgggaaggtataaaaccttcccaccatgagaaaatttgttttagccattagattaatttgaaaac 116  Q
    ||||| || |||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  16984326 ggtggctgctcacatgggaaggtatgaaaccttccccccatgggaaaatttgttttagccattagattaatttgaaaac 16984404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 50 - 157
Target Start/End: Complemental strand, 51289015 - 51288908
Alignment:
Q  50 catgggaaggtataaaaccttcccaccatgagaaaatttgttttagccattagattaatttgaaaacaccatcttatcatacacttgtaacactggatta 149  Q
    ||||| |||||||||||| || ||||||| | ||||||| ||||||||||||||||||| ||| ||||| ||||||||||||| || ||||| | |||||    
T  51289015 catggaaaggtataaaacttttccaccataaaaaaatttattttagccattagattaatctgagaacacaatcttatcatacatttttaacattagatta 51288916  T
Q  150 tttctttt 157  Q
    ||||||||    
T  51288915 tttctttt 51288908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 52720605 - 52720707
Alignment:
Q  46 ttcacatgggaaggtataaaaccttcccaccatgagaaaatttgttttagccattagattaatttgaaaacaccatcttatcatacacttgtaacactgg 145  Q
    |||||||||||||||||||||| ||||||||||  |||| |||  |||||   |||||||||||||| ||||| |||||||||||||||  ||||||| |    
T  52720605 ttcacatgggaaggtataaaacattcccaccataggaaagtttactttagtggttagattaatttgagaacacaatcttatcatacactactaacactag 52720704  T
Q  146 att 148  Q
    |||    
T  52720705 att 52720707  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 16989304 - 16989349
Alignment:
Q  112 aaaacaccatcttatcatacacttgtaacactggattatttctttt 157  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  16989304 aaaacaccatcttatcatacacttgtaacactgaattatttctttt 16989349  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 41466213 - 41466259
Alignment:
Q  38 ggtggttgttcacatgggaaggtataaaaccttcccaccatgagaaa 84  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||    
T  41466213 ggtggctgttcacatgggaaggtataaaaccttcccaccatgggaaa 41466259  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 45320456 - 45320502
Alignment:
Q  38 ggtggttgttcacatgggaaggtataaaaccttcccaccatgagaaa 84  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||    
T  45320456 ggtggctgttcacatgggaaggtataaaaccttcccaccatgggaaa 45320502  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 41465244 - 41465291
Alignment:
Q  46 ttcacatgggaaggtataaaaccttcccaccatgagaaaatttgtttt 93  Q
    ||||||||||||||| |||||||||||||||||| |||| ||| ||||    
T  41465244 ttcacatgggaaggtgtaaaaccttcccaccatgggaaagtttatttt 41465291  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 35972642 - 35972602
Alignment:
Q  44 tgttcacatgggaaggtataaaaccttcccaccatgagaaa 84  Q
    |||||||||||||||||||||| | ||||||||||| ||||    
T  35972642 tgttcacatgggaaggtataaagctttcccaccatgggaaa 35972602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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