View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_low_15 (Length: 419)
Name: NF17657_low_15
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_low_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 62 - 419
Target Start/End: Original strand, 45691317 - 45691674
Alignment:
| Q |
62 |
atggcatcaataatcacaaccctaaacccactgagacgttaattaattccagttagaggatgcattattatgctgaattgtttttgtaccatgctggtta |
161 |
Q |
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| T |
45691317 |
atggcatcaataatcacaaccctaaacccattgagacgttaattaattccagttagaggatgcattattatgctgaattgtttttgtaccatgctggtta |
45691416 |
T |
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| Q |
162 |
aataaataggaggaaactcactttcctatccatgtcaccacttggataccatcttgtttacacgtcctacagctggagacaaaagaagtgaaaaaatctt |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45691417 |
aataaataggaggaaactcactttcctatccatgtcaccacttggataccatcttgtttacacgtcctacagctggagacaaaagaagtgaaaaagtctt |
45691516 |
T |
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| Q |
262 |
tcaaattgttaatagggttgggataaacaacaacttagttcgtggttatggaagaaaggaccgaatgttgcataaagttacaaaaccccatgacaatgaa |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45691517 |
tcaaattgttaatagggttgggataaacaacaacttagttcgtggttatggaagaaaggaccgaatgttgcataaagtgacaaaaccccatgacaatgaa |
45691616 |
T |
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| Q |
362 |
agcttcgttcagtataggatcaaatacggatatagtaatagtgccagttgatgtattt |
419 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45691617 |
agcttcattcagtataggatcaaatacggatatagtaatagtgccagttgatgtattt |
45691674 |
T |
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