View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17657_low_16 (Length: 390)
Name: NF17657_low_16
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_low_16 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 13 - 390
Target Start/End: Complemental strand, 36264516 - 36264142
Alignment:
| Q |
13 |
taggagtggtgtaaattgtattaatttaagggtacaattaaaaaatatcaaataaacaaaagtgacaattttttgggacaatcttcttcttttacaaata |
112 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36264516 |
taggagtggtgtaaattgtattaatttaaaggtacaattaaaaaatatcaaataaacaaaagtgacaattttttgggacaatcttcttcttttacaaata |
36264417 |
T |
|
| Q |
113 |
tgacaattattatgggatagaaatagaaggagtatatcacattggaccacaatgctatgtctagcaaacgtgcttgacgggttgggagaagaaacnnnnn |
212 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36264416 |
tgacaattattatgggatagaaat---aggagtatatcacattggaccacaatgctatgtctagcaaacgtgcttgacgggttgggagaagaaacaaaaa |
36264320 |
T |
|
| Q |
213 |
nnnggtacacaaacgtaatgaaaggggcacttctcagtattaaagcacataccaaccatagttttacctcaacttcaatgagaatcatggttacattatt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36264319 |
aaaggtacacaaacgtaatgaaaggggcacttctcagtatcaaagcacataccaaccatagttttacctcaacttcaatgagaatcatggttacattatt |
36264220 |
T |
|
| Q |
313 |
cagtgctaccatagttactctaatcttattgcttaatttccacatcccacaaacaaaatctcagcaagaatatctaga |
390 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36264219 |
cagtgctaccatacttactctaatcttattgcttaatttccacatcccacaaacaaaatctcagcaagaatatctaga |
36264142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 286 - 390
Target Start/End: Complemental strand, 36256469 - 36256365
Alignment:
| Q |
286 |
ttcaatgagaatcatggttacattattcagtgctaccatagttactctaatcttattgcttaatttccacatcccacaaacaaaatctcagcaagaatat |
385 |
Q |
| |
|
|||||||| |||||||| | |||||||| ||||||||| |||||||||||| ||| | ||| |||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
36256469 |
ttcaatgataatcatgggttcattattctgtgctaccacagttactctaattttaattcttgatttccacataccacaaacaaaatctcagcaagactat |
36256370 |
T |
|
| Q |
386 |
ctaga |
390 |
Q |
| |
|
||||| |
|
|
| T |
36256369 |
ctaga |
36256365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University