View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17657_low_18 (Length: 381)
Name: NF17657_low_18
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_low_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 34865573 - 34865211
Alignment:
| Q |
1 |
gtgacggagacttgaagaaaaagtgtgtgatgatggatgatgacgcagttgactggctaaatcttcctcgagaattatggttagttattatatccatgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34865573 |
gtgacggagacttgaagaaaaagtgtgtgatgatggatgatgacgcagttgactggctaaatcttcctcgagaattatggttagttattatatccaagaa |
34865474 |
T |
|
| Q |
101 |
tttgaatccatttgatgttcttcgattccgtagtgtctgtgctttattgcgctctattcttccccctcctttttcttctccttctcacacacttcgcatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
34865473 |
tttgaatccatttgatgttcttcgattccgtagtgtctgtgctttattgcgctctattcttccccctccttttccttctccttctcatacacttcgcatt |
34865374 |
T |
|
| Q |
201 |
ccagatggtaagtttttgctattcaccgaaaccaaaatatttcgcctacaaccattattgccaactagttcttctaataaagggtggatcataaaggttg |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34865373 |
ccagatggtaagtttttgcttttcaccgaaaccaaaatatttcgcctacaaccattatttccaactagttcttctaataaagggtggatcataaaggttg |
34865274 |
T |
|
| Q |
301 |
aaaaatcgaaatctggcaaacttcgtcacttagatgttgtaactaacactcatatgtcacaca |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34865273 |
aaaaatcgaaatctggcaaacttcgtcacttagatgttgtaactaacactcatatgtcacaca |
34865211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 266
Target Start/End: Original strand, 51857986 - 51858220
Alignment:
| Q |
5 |
cggagacttgaagaaaaagtgtgtgatgatggatgatgacgcagttgactggctaaatcttcctcgagaattatggttagttattatatccatgaatttg |
104 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||| | ||||| |||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
51857986 |
cggagacttgaagaaagtgtgtgtgatgatagatgatgacacggttgattggctaaatcttcctcgagacttatggttagttattatatcca--aaaaaa |
51858083 |
T |
|
| Q |
105 |
aatccatttgatgttcttcgattccgtagtgtctgtgctttattgcgctctattcttccccctcctttttcttctccttctcacacacttcgcattccag |
204 |
Q |
| |
|
||| ||||||||||||||| ||||||||||| ||||||||||||| |||||||||| ||| | ||||| |||| || |
|
|
| T |
51858084 |
aat-------------ttcgattccgtagtgcctgtgctttatggcgctctattctttcccctccttt------------tcatagacttcatattcaag |
51858158 |
T |
|
| Q |
205 |
atggtaagtttttgctattcaccgaaaccaaaatatttcgcctacaaccattattgccaact |
266 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
51858159 |
ctgctaagtttttgctactcaccgaaaccaaaatatttcgcacacaaccattgttgccaact |
51858220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 111 - 324
Target Start/End: Complemental strand, 9518636 - 9518423
Alignment:
| Q |
111 |
tttgatgttcttcgattccgtagtgtctgtgctttattgcgctctattcttccccctcctttttcttctccttctcacacacttcgcattccagatggta |
210 |
Q |
| |
|
||||||||| || |||| || |||| ||| |||| | |||||||||| |||||||||||||| | ||| | |||||||||||||| |||||| | ||| |
|
|
| T |
9518636 |
tttgatgttattagatttcgaggtgtttgtcctttgtggcgctctattattccccctccttttccatcttcctctcacacacttcgtattccacactgta |
9518537 |
T |
|
| Q |
211 |
agtttttgctattcaccgaa--accaaaatatttcgcctacaaccattattgccaactagttcttctaataaagggtggatcataaaggttgaaaaatcg |
308 |
Q |
| |
|
| ||||| || || || || | ||| ||| ||||||| |||||||| | |||||| || || |||||||||||||||||||||| ||||| || | |
|
|
| T |
9518536 |
aatttttcct--tctccaaactaataaagtatatcgcctagaaccattagtatcaactaattattttaataaagggtggatcataaagattgaagaaaca |
9518439 |
T |
|
| Q |
309 |
aaatctggcaaacttc |
324 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
9518438 |
aaatccggcaaacttc |
9518423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 51858221 - 51858278
Alignment:
| Q |
306 |
tcgaaatctggcaaacttcgtcacttagatgttgtaactaacactcatatgtcacaca |
363 |
Q |
| |
|
||||||||| |||||||||||||||||||| || | ||||||| ||| || ||||||| |
|
|
| T |
51858221 |
tcgaaatctagcaaacttcgtcacttagatattttgactaacaatcacatctcacaca |
51858278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 337
Target Start/End: Original strand, 34145310 - 34145375
Alignment:
| Q |
272 |
ttctaataaagggtggatcataaaggttgaaaaatcgaaatctggcaaacttcgtcacttagatgt |
337 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||| |||||||| ||| |||||||||||||||| |
|
|
| T |
34145310 |
ttctaatatagggtggatcataaaggttgaagaatcaaaatctggaaaatttcgtcacttagatgt |
34145375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University