View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_low_2 (Length: 795)
Name: NF17657_low_2
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 700; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 15 - 778
Target Start/End: Original strand, 26275162 - 26275924
Alignment:
| Q |
15 |
gagaagaaacaagtgggaaaataaatataaagaactcagccaagtggcagctgagtaataaacaaaaggttgtttaaggttacttgtgactgacaaattg |
114 |
Q |
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| T |
26275162 |
gagaagaaacaagtgg-aaaataaatataaagaactcagccaagtggcagctgagtaataaacaaaaggttgtttaaggttacttgtgactgacaaattg |
26275260 |
T |
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| Q |
115 |
tcgaggatgtgaatatgaagcccaaactgaagatgggaaaggtgagaacagtggcattgcagttggtaaaaactaactaacatgaaatcttacaccaggt |
214 |
Q |
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| T |
26275261 |
tcgaggatgtgaatatgaagatcaaactgaagatgggaaaggtgagaacagtggcattgcagttggtaaaaactacctaacatgaaatattacaccaggt |
26275360 |
T |
|
| Q |
215 |
agaaaatgtcgaccatattgcttgtatgtgaagtttcatttggcctgctattatgttgcgggtttatgacatgtattttggcactgatgtacatctaaaa |
314 |
Q |
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| T |
26275361 |
agaaaatgtcgaccatattgcttgtatgtgaagtttcatttggcctgctattatgttgcgggtttatgacatgtattttggcactgatgtagatctaaaa |
26275460 |
T |
|
| Q |
315 |
cttaaatgtctcaacagttacatgcaatgtatcgtacctgtatcgaagtgctacgattgcagtcgccgcaatttatatttgcaacattgagttgtgatcc |
414 |
Q |
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| T |
26275461 |
cttcaatgtctcaacagttacatgcaatgcatcgtacctgtatcgaagcgctacgattgcagtcgccgcaatttatatttgcaacattgagatgtgatcc |
26275560 |
T |
|
| Q |
415 |
aagagcacgtgaatacaagtttctagccatcccaattcttcattgtcatttgcaagtttaagttggcatccaatttttcctttataaatgccagctcaga |
514 |
Q |
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| T |
26275561 |
aagagcacgtgaatacaagtttctagccaacccaattcttcattgtcatttgcaagtttatgttagtatccaatttttcctttataaatgccagctcaga |
26275660 |
T |
|
| Q |
515 |
tataggtcaaacagatgtgataatttggcatccagcatagcagatttagaagcttgaattatgttgaagctacagcctacttccacaataacactccgaa |
614 |
Q |
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| T |
26275661 |
tataggtcaaacagatgtgataatttggcatccagcatagcagatttagaagcttgaattatgttgaagctacagcctacttccacaataacactccgaa |
26275760 |
T |
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| Q |
615 |
acagatgttccatcgaatgcgcattattattgaaatatctatcattacgttctatccaagtcctccagataatgtgcagaactgctgctatcaacacctg |
714 |
Q |
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| T |
26275761 |
acagatgttccatcgaatgcgcattattattgaaatatctatcattacgttctatccaagtcctccagataatgtgcagaactgctgctatcaacacctg |
26275860 |
T |
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| Q |
715 |
ctgaacctgtttgctccaattaccaacacaactgtcaatcacattcagccaccggagcagtccg |
778 |
Q |
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| T |
26275861 |
ctgaacctgtttgcttcaattaccaacacaactgtcaatcacattcagccaccggagcagtccg |
26275924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 26250885 - 26250817
Alignment:
| Q |
139 |
aactgaagatgggaaaggtgagaacagtggcattgcagttggtaaaaactaactaacatgaaatcttac |
207 |
Q |
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| T |
26250885 |
aactgaagatgggaaaggtgagaaagttggtattgcaggtggtagaaactacctaacatgaaatcttac |
26250817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 619 - 744
Target Start/End: Original strand, 39397830 - 39397955
Alignment:
| Q |
619 |
atgttccatcgaatgcgcattattattgaaatatctatcattacgttctatccaagtcctccagataatgtgcagaactgctgctatcaacacctgctga |
718 |
Q |
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| T |
39397830 |
atgttccaacgaattcgccttattattgaaataacgctcattacgttctatctaaatcttccaaaccgtgtgcagaaccgctgctattaagacttgctgc |
39397929 |
T |
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| Q |
719 |
acctgtttgctccaattaccaacaca |
744 |
Q |
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| T |
39397930 |
accgctttgctccaattaccaacaca |
39397955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 640 - 744
Target Start/End: Complemental strand, 23893301 - 23893197
Alignment:
| Q |
640 |
attattgaaatatctatcattacgttctatccaagtcctccagataatgtgcagaactgctgctatcaacacctgctgaacctgtttgctccaattacca |
739 |
Q |
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| T |
23893301 |
attattgaaataacgctcattacgatctattcaaatcttccaaactgtgtgcagaactgctgctattaagacttgctgcaccgctttgctccaattacca |
23893202 |
T |
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| Q |
740 |
acaca |
744 |
Q |
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| T |
23893201 |
acaca |
23893197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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