View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_low_20 (Length: 367)
Name: NF17657_low_20
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 30499920 - 30500280
Alignment:
| Q |
1 |
tgatgtcaggcaactcagtataatgctgcacaagagacagacacgaaacttcaagaaattactctgacaacaaattacagtcagtcattggtatgaaaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30499920 |
tgatgtcaggcaactcagtataatgctgcacaagagacagacacgaaacttcaagaaattact--gacaacaaattacagtcagtcattggtatgaaaag |
30500017 |
T |
|
| Q |
101 |
ccgagaacctgaagagcccggatgaaaaggccggccttttcacaaagtttagcaatacgtggacgatcataatgactaaacacgccttttgccaatatag |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30500018 |
ccaagaacctgaagagcccggatgaaaaggccggccttttcacaaagtttagcaatacgtggacgatcataatgactaaacacgccttttgccaatatag |
30500117 |
T |
|
| Q |
201 |
aatcagcaacatttggaaaggtcttaagattgatttccagcagctaaaaatgattagagcaaattttcataaaatcacnnnnnnnntattgtatgactcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30500118 |
aatcagcaacatttggaaaggtcttaagattgatttccagcagctaaaaatgattagagcaaattttcataaaatcacaaaaaaaatattgtatgactcc |
30500217 |
T |
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| Q |
301 |
atcaactcgtagataaagattaaggcaaagaaaataaaggaacctttgtttgatgatgtccat |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30500218 |
atcaactcgtagataaagattaaggcaaagaaaataaaggaacctttgtttgaagatgtccat |
30500280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 30540263 - 30540623
Alignment:
| Q |
1 |
tgatgtcaggcaactcagtataatgctgcacaagagacagacacgaaacttcaagaaattactctgacaacaaattacagtcagtcattggtatgaaaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30540263 |
tgatgtcaggcaactcagtataatgctgcacaagagacagacacgaaacttcaagaaattact--gacaacaaattacagtcagtcattggtatgaaaag |
30540360 |
T |
|
| Q |
101 |
ccgagaacctgaagagcccggatgaaaaggccggccttttcacaaagtttagcaatacgtggacgatcataatgactaaacacgccttttgccaatatag |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30540361 |
ccaagaacctgaagagcccggatgaaaaggccggccttttcacaaagtttagcaatacgtggacgatcataatgactaaacacgccttttgccaatatag |
30540460 |
T |
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| Q |
201 |
aatcagcaacatttggaaaggtcttaagattgatttccagcagctaaaaatgattagagcaaattttcataaaatcacnnnnnnnntattgtatgactcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30540461 |
aatcagcaacatttggaaaggtcttaagattgatttccagcagctaaaaatgattagagcaaattttcataaaatcacaaaaaaaatattgtatgactcc |
30540560 |
T |
|
| Q |
301 |
atcaactcgtagataaagattaaggcaaagaaaataaaggaacctttgtttgatgatgtccat |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30540561 |
atcaactcgtagataaagattaaggcaaagaaaataaaggaacctttgtttgaagatgtccat |
30540623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 104 - 251
Target Start/End: Complemental strand, 26028922 - 26028775
Alignment:
| Q |
104 |
agaacctgaagagcccggatgaaaaggccggccttttcacaaagtttagcaatacgtggacgatcataatgactaaacacgccttttgccaatatagaat |
203 |
Q |
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|||||||||||||| || ||||||||||||||||||||||| |||| |||||| ||||| |||||||||||| | |||| ||| || |||||||||| || |
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| T |
26028922 |
agaacctgaagagcacgtatgaaaaggccggccttttcacagagttgagcaatgcgtgggcgatcataatgagtgaacatgccattggccaatatagcat |
26028823 |
T |
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| Q |
204 |
cagcaacatttggaaaggtcttaagattgatttccagcagctaaaaat |
251 |
Q |
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|||||||||||||||| ||| ||||| |||||||| | |||||||| |
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| T |
26028822 |
cagcaacatttggaaacgtcactagattaatttccagaacctaaaaat |
26028775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 31846241 - 31846165
Alignment:
| Q |
137 |
ttttcacaaagtttagcaatacgtggacgatcataatgactaaacacgccttttgccaatatagaatcagcaacatt |
213 |
Q |
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||||||||||||| ||||| || ||||| |||||||| ||||||| ||| || ||||| || | |||||||||||| |
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| T |
31846241 |
ttttcacaaagttgggcaatccgaggacggtcataatggctaaacatgccgttagccaaaattgcatcagcaacatt |
31846165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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