View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17657_low_22 (Length: 364)

Name: NF17657_low_22
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17657_low_22
NF17657_low_22
[»] chr4 (11 HSPs)
chr4 (1-361)||(46690508-46690868)
chr4 (285-361)||(9399227-9399303)
chr4 (285-361)||(13518568-13518644)
chr4 (285-361)||(15018248-15018324)
chr4 (285-361)||(15019888-15019964)
chr4 (285-358)||(13518032-13518105)
chr4 (285-361)||(39488758-39488834)
chr4 (288-361)||(21377201-21377273)
chr4 (288-361)||(42873040-42873112)
chr4 (288-361)||(11098499-11098573)
chr4 (288-361)||(18281357-18281429)
[»] scaffold0096 (1 HSPs)
scaffold0096 (285-361)||(22399-22475)
[»] chr8 (7 HSPs)
chr8 (285-361)||(17277409-17277485)
chr8 (285-361)||(8366107-8366183)
chr8 (285-361)||(17278283-17278358)
chr8 (299-361)||(6778277-6778338)
chr8 (288-361)||(17857163-17857235)
chr8 (288-361)||(23016372-23016444)
chr8 (288-342)||(23016706-23016759)
[»] chr7 (9 HSPs)
chr7 (285-361)||(9647543-9647619)
chr7 (285-361)||(23446662-23446738)
chr7 (289-361)||(7842676-7842748)
chr7 (285-361)||(40998827-40998903)
chr7 (285-358)||(9596044-9596117)
chr7 (285-358)||(9647007-9647080)
chr7 (285-361)||(41000686-41000763)
chr7 (318-361)||(24790122-24790165)
chr7 (318-361)||(24790156-24790199)
[»] chr5 (7 HSPs)
chr5 (285-361)||(245046-245122)
chr5 (285-361)||(29949587-29949663)
chr5 (285-361)||(29951225-29951301)
chr5 (285-361)||(21352695-21352771)
chr5 (285-361)||(38936717-38936793)
chr5 (297-361)||(21352606-21352670)
chr5 (285-358)||(16780615-16780686)
[»] chr1 (11 HSPs)
chr1 (285-361)||(36233308-36233384)
chr1 (285-361)||(36233964-36234040)
chr1 (285-358)||(20189405-20189478)
chr1 (285-361)||(24157661-24157737)
chr1 (285-363)||(48463963-48464040)
chr1 (285-361)||(20191038-20191114)
chr1 (285-364)||(48462803-48462881)
chr1 (285-336)||(20759128-20759178)
chr1 (288-361)||(31390149-31390221)
chr1 (288-361)||(40553903-40553975)
chr1 (288-361)||(40554666-40554738)
[»] scaffold0269 (1 HSPs)
scaffold0269 (285-361)||(1975-2051)
[»] scaffold0146 (1 HSPs)
scaffold0146 (285-361)||(31591-31667)
[»] scaffold0026 (2 HSPs)
scaffold0026 (285-361)||(670-746)
scaffold0026 (285-361)||(86583-86659)
[»] scaffold0021 (2 HSPs)
scaffold0021 (285-361)||(17657-17733)
scaffold0021 (285-361)||(27188-27264)
[»] chr3 (10 HSPs)
chr3 (285-361)||(5554399-5554475)
chr3 (285-361)||(16022760-16022836)
chr3 (285-361)||(16346634-16346710)
chr3 (285-361)||(47418584-47418660)
chr3 (288-361)||(23460202-23460275)
chr3 (285-361)||(5553198-5553274)
chr3 (285-361)||(25531636-25531712)
chr3 (285-361)||(47566476-47566551)
chr3 (288-361)||(2683485-2683557)
chr3 (285-313)||(25532839-25532867)
[»] chr2 (9 HSPs)
chr2 (285-361)||(18535910-18535986)
chr2 (285-361)||(22299690-22299766)
chr2 (285-361)||(22300504-22300580)
chr2 (285-361)||(31974101-31974177)
chr2 (285-361)||(24806892-24806969)
chr2 (285-361)||(24808748-24808825)
chr2 (288-361)||(44793420-44793492)
chr2 (300-361)||(24806089-24806151)
chr2 (288-361)||(44792615-44792687)
[»] scaffold0025 (1 HSPs)
scaffold0025 (287-361)||(54856-54931)
[»] scaffold0018 (1 HSPs)
scaffold0018 (285-361)||(692-769)
[»] scaffold0013 (1 HSPs)
scaffold0013 (288-361)||(241046-241119)
[»] scaffold0094 (1 HSPs)
scaffold0094 (288-361)||(13510-13582)
[»] scaffold0139 (1 HSPs)
scaffold0139 (288-361)||(4225-4297)
[»] scaffold0321 (1 HSPs)
scaffold0321 (288-361)||(5220-5292)
[»] scaffold0180 (1 HSPs)
scaffold0180 (288-342)||(11410-11463)
[»] scaffold0002 (1 HSPs)
scaffold0002 (288-361)||(375320-375392)


Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 46690868 - 46690508
Alignment:
Q  1 gttatcctaatcaactctctgctcaacttctcctttcaaaaatacattaatattcaaattattgaaaacccgctctttaaactgacttacctataaatcc 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46690868 gttatcctaatcaactctctgctcaacttctcctttaaaaaatacattaatattcaaattattgaaaacccgctctttaaactgacttacctataaatcc 46690769  T
Q  101 aacctccattgaataagcaccaagtggttccaaaccaagctagccaaagaacaatcatgaaacacatgtaaaacgttctcctcaactccgacacaattat 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46690768 aacctccattgaataagcaccaagtggttccaaacaaagctagccaaagaacaatcatgaaacacatgtaaaacgttctcctcaactccgacacaattat 46690669  T
Q  201 caaaataagtggtatttaaaactcggaccaaaataagtggttcagaaccaaattaatttgaatattaatgaaaaatattgaccaatcatgacctacgaaa 300  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  46690668 caaaataagtggtatttaaaactcggatcaaaataagtggttcagaatcaaattaatttgaatattaatgtaaaatattgacccatcatgacctacgaaa 46690569  T
Q  301 ataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||| ||   |||||||||||  ||||||||||||||| | ||||||||||||||    
T  46690568 ataaaactttaaatttaaaattaatttagttcttttattccacactgactttattattctt 46690508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 9399227 - 9399303
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  9399227 atcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 9399303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 13518568 - 13518644
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  13518568 atcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 13518644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 15018248 - 15018324
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  15018248 atcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 15018324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 15019888 - 15019964
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  15019888 atcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 15019964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 285 - 358
Target Start/End: Original strand, 13518032 - 13518105
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattatt 358  Q
    ||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||    
T  13518032 atcatgatctacgaaaataaaactttgaacccaaagttaatttggttcttttattccacaataactttattatt 13518105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 39488758 - 39488834
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | | | ||||||||||||    
T  39488758 atcatgacctacgaaaataaaactttgaacccaaaattaattaggttcttttattccataatgaatttattattctt 39488834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 361
Target Start/End: Complemental strand, 21377273 - 21377201
Alignment:
Q  288 atgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    ||||||||||||||||||| | |||||| ||||| |||||| ||||||||||||| | | ||||||||||||||    
T  21377273 atgacctacgaaaataaaaatctgaaccaaaaat-aatttggttcttttattccatattgactttattattctt 21377201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 361
Target Start/End: Original strand, 42873040 - 42873112
Alignment:
Q  288 atgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    ||||||||||||||||| | |||||||| ||||| |||||||||||||||||||| | | | ||||||||||||    
T  42873040 atgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgaatttattattctt 42873112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 361
Target Start/End: Complemental strand, 11098573 - 11098499
Alignment:
Q  288 atgacctacgaaaataaaactttgaacccaaaattaa-tttgattcttttattccacagtaactttattattctt 361  Q
    ||||||||||||||||| | |||||||| |||| ||| |||||||||||||||||| | | | ||||||||||||    
T  11098573 atgacctacgaaaataacaatttgaaccaaaaaataaatttgattcttttattccataatgaatttattattctt 11098499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 361
Target Start/End: Original strand, 18281357 - 18281429
Alignment:
Q  288 atgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||   |||||||| ||||| |||||||||||||||||| | | | ||||||||||||||    
T  18281357 atgacctacgaaaataactatttgaaccaaaaat-aatttgattcttttattcgataatgactttattattctt 18281429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 22475 - 22399
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  22475 atcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 22399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 17277485 - 17277409
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  17277485 atcatgacctacaaaaataaaactttgaacccaaaattaatttgattcttttattccacaatgactttattattctt 17277409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 8366183 - 8366107
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | ||||||||||||    
T  8366183 atcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgaatttattattctt 8366107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 17278283 - 17278358
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||| |||||||||||| ||||| |||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  17278283 atcatgacttacgaaaataaa-ctttggacccaaaattaatttggttcttttattccacaatgactttattattctt 17278358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 6778277 - 6778338
Alignment:
Q  299 aaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    ||||||||||| ||||| |||||||||| | ||||||||||||||| ||||||||||||||||    
T  6778277 aaataaaacttagaacc-aaaattaattcggttcttttattccacaataactttattattctt 6778338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 361
Target Start/End: Complemental strand, 17857235 - 17857163
Alignment:
Q  288 atgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    ||||||||||||||||| | |||||||| ||||| |||||||||||||||||||| | | | ||||||||||||    
T  17857235 atgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgaatttattattctt 17857163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 361
Target Start/End: Original strand, 23016372 - 23016444
Alignment:
Q  288 atgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    ||||||||||||||||| | |||||||| ||||| |||||||||||||||||||| | | |||||| |||||||    
T  23016372 atgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgactttaatattctt 23016444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 342
Target Start/End: Original strand, 23016706 - 23016759
Alignment:
Q  288 atgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattcca 342  Q
    ||||||||||||||||| | |||||| |||||| |||||||||| ||||||||||    
T  23016706 atgacctacgaaaataacaatttgaa-ccaaaaataatttgatttttttattcca 23016759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 9647543 - 9647619
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  9647543 atcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 9647619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 23446738 - 23446662
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  23446738 atcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 23446662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 289 - 361
Target Start/End: Complemental strand, 7842748 - 7842676
Alignment:
Q  289 tgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  7842748 tgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 7842676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 40998827 - 40998903
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  40998827 atcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 40998903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 285 - 358
Target Start/End: Original strand, 9596044 - 9596117
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattatt 358  Q
    ||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||    
T  9596044 atcatgatctacgaaaataaaactttgaacccaaagttaatttggttcttttattccacaataactttattatt 9596117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 285 - 358
Target Start/End: Original strand, 9647007 - 9647080
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattatt 358  Q
    ||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||    
T  9647007 atcatgatctacgaaaataaaactttgaacccaaagttaatttggttcttttattccacaataactttattatt 9647080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 41000686 - 41000763
Alignment:
Q  285 atcatgacctacgaaaa-taaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  41000686 atcatgacctacgaaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 41000763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 361
Target Start/End: Complemental strand, 24790165 - 24790122
Alignment:
Q  318 aaattaatttgattcttttattccacagtaactttattattctt 361  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||    
T  24790165 aaattaatttggttcttttattccacaatgactttattattctt 24790122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 361
Target Start/End: Original strand, 24790156 - 24790199
Alignment:
Q  318 aaattaatttgattcttttattccacagtaactttattattctt 361  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||    
T  24790156 aaattaatttggttcttttattccacaatgactttattattctt 24790199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 245046 - 245122
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  245046 atcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 245122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 29949663 - 29949587
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  29949663 atcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 29949587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 29951301 - 29951225
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  29951301 atcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 29951225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 21352695 - 21352771
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | | ||||||||||||||    
T  21352695 atcatgacctacgaaaataaaactttgaacccaaaattaattaggttcttttattccataatgactttattattctt 21352771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 38936793 - 38936717
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| |||| | ||||||||||||||    
T  38936793 atcatgacctacgaaaataaaattttgaacccaaaattgatttggttcttttatttcacaatgactttattattctt 38936717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 21352670 - 21352606
Alignment:
Q  297 gaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    ||||||||||||||||| |||||||||||| | ||||||||||||| | | ||||||||||||||    
T  21352670 gaaaataaaactttgaatccaaaattaattaggttcttttattccataatgactttattattctt 21352606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 358
Target Start/End: Complemental strand, 16780686 - 16780615
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattatt 358  Q
    ||||||| ||||||||||||||| ||||| ||||||||||||  ||||||||||| |||| | |||||||||||    
T  16780686 atcatgaactacgaaaataaaacattgaa-ccaaaattaattcaattcttttatt-cacaatgactttattatt 16780615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 36233384 - 36233308
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  36233384 atcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 36233308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 36233964 - 36234040
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  36233964 atcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 36234040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 285 - 358
Target Start/End: Original strand, 20189405 - 20189478
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattatt 358  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| | |||||||||||    
T  20189405 atcatgacctacgaaaataaaactttgaaaccaaaattaatttggttcttttattccacaatgactttattatt 20189478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 24157661 - 24157737
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | | ||||||||||||||    
T  24157661 atcatgacctacgaaaataaaactttgaacccaaaattaattaggttcttttattccataatgactttattattctt 24157737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 48463963 - 48464040
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattcttct 363  Q
    |||||||||||| ||||||||| |||||||||||||||| |||| ||||||||||||||| ||||||||||||| ||||    
T  48463963 atcatgacctacaaaaataaaa-tttgaacccaaaattattttggttcttttattccacaataactttattattattct 48464040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 20191038 - 20191114
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| | | | ||||||||||||||    
T  20191038 atcatgacatacgaaaataaaactttgaacccaaaattaattaggttcttttattctataatgactttattattctt 20191114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 48462881 - 48462803
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattcttctc 364  Q
    |||||||||||| |||||||||||||||| | |||||||||||||||||||| || | || | |||||||||||||||||    
T  48462881 atcatgacctacaaaaataaaactttgaatctaaaattaatttgattctttt-tttcgcaatgactttattattcttctc 48462803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 285 - 336
Target Start/End: Complemental strand, 20759178 - 20759128
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattctttt 336  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  20759178 atcatgacctacgaaaataaaactttgaa-ccaaaattaatttggttctttt 20759128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 361
Target Start/End: Complemental strand, 31390221 - 31390149
Alignment:
Q  288 atgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    ||||||||||||||||| | |||||||| ||||| |||||||||||||||||||| | | | ||||||||||||    
T  31390221 atgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgaatttattattctt 31390149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 361
Target Start/End: Complemental strand, 40553975 - 40553903
Alignment:
Q  288 atgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    ||||||||||||||||| | |||||||| ||||| |||||||||||||||||||| | | | ||||||||||||    
T  40553975 atgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgaatttattattctt 40553903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 361
Target Start/End: Original strand, 40554666 - 40554738
Alignment:
Q  288 atgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    ||||||||||||||||| | |||||||| ||||| |||||||||||||||||||| | | | ||||||||||||    
T  40554666 atgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgaatttattattctt 40554738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 1975 - 2051
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | || |||||||||||    
T  1975 atcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgacattattattctt 2051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 31667 - 31591
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  31667 atcatgacctacgaaaataagactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 31591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 670 - 746
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || | ||||||||||||||    
T  670 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttatttctcaatgactttattattctt 746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 86659 - 86583
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||| |||||||||| |||||||||||||||||||| ||| ||||||||||| | ||||||||||||||    
T  86659 atcatgacctacaaaaataaaacattgaacccaaaattaatttggttcctttattccacaatgactttattattctt 86583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 17733 - 17657
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||||    
T  17733 atcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcaacactgactttattattctt 17657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 27264 - 27188
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||||    
T  27264 atcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcaacactgactttattattctt 27188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 5554399 - 5554475
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  5554399 atcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 5554475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 16022760 - 16022836
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  16022760 atcatgacctacgaaaataaaactttggacccaaaattaatttggttcttttattccacaatgactttattattctt 16022836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 16346710 - 16346634
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  16346710 atcatgacctacgaaaataagactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 16346634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 47418584 - 47418660
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  47418584 atcatgacctacgaaaataagactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 47418660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 288 - 361
Target Start/End: Complemental strand, 23460275 - 23460202
Alignment:
Q  288 atgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||||    
T  23460275 atgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattctacaatgactttattattctt 23460202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 5553274 - 5553198
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||| | ||||||||||||||    
T  5553274 atcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttatttcacaatgactttattattctt 5553198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 25531712 - 25531636
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| | | ||||||||||||    
T  25531712 atcatgacctacgaaaataaaactttgaacccaaaattaatttggttctttttttctacaatgaatttattattctt 25531636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 47566551 - 47566476
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    ||||||| |||||||||||||| ||| || | |||||||| |  |||||||||||||||| | ||||||||||||||    
T  47566551 atcatgatctacgaaaataaaattttaaatc-aaaattaaatcaattcttttattccacaatgactttattattctt 47566476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 361
Target Start/End: Complemental strand, 2683557 - 2683485
Alignment:
Q  288 atgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||| |||| ||||||| |||||||||  ||||||||||||||| |||||||||| | | | ||||||||||||    
T  2683557 atgatctacaaaaataacactttgaaca-aaaattaatttgatttttttattccaaaatgattttattattctt 2683485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 313
Target Start/End: Original strand, 25532839 - 25532867
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaa 313  Q
    |||||||||||||||||||||||||||||    
T  25532839 atcatgacctacgaaaataaaactttgaa 25532867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 18535910 - 18535986
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  18535910 atcatgacctacgaaaataagactttgaacccaaaattaatttggttcttttattccacaatgactttattattctt 18535986  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 22299766 - 22299690
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | ||||||||||||    
T  22299766 atcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgaatttattattctt 22299690  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 22300504 - 22300580
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | ||||||||||||    
T  22300504 atcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgaatttattattctt 22300580  T

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Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 31974101 - 31974177
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | | ||||||||||||||    
T  31974101 atcatgacctacgaaaataaaactttgaacccaaaattaattaggttcttttattccataatgactttattattctt 31974177  T

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Target: chr2; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 24806892 - 24806969
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaac-tttattattctt 361  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| | || ||||||||||||    
T  24806892 atcatgacctacaaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgacttttattattctt 24806969  T

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Target: chr2; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 24808748 - 24808825
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactt-tattattctt 361  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| | |||| ||||||||||    
T  24808748 atcatgacctacaaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgacttctattattctt 24808825  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 361
Target Start/End: Original strand, 44793420 - 44793492
Alignment:
Q  288 atgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    ||||||||||||||||| | |||||||| ||||| |||||||||||||||||||| | | | ||||||||||||    
T  44793420 atgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgaatttattattctt 44793492  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 24806151 - 24806089
Alignment:
Q  300 aataaaactttgaacccaaaattaatttgattcttttattccacagtaac-tttattattctt 361  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||| | || ||||||||||||    
T  24806151 aataaaacattgaacccaaaattaaattggttcttttattccacaatgacttttattattctt 24806089  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 361
Target Start/End: Complemental strand, 44792687 - 44792615
Alignment:
Q  288 atgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    ||||||||| ||||||| | |||||||| ||||| |||||||||||||||||||| | | | ||||||||||||    
T  44792687 atgacctacaaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgaatttattattctt 44792615  T

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Target: scaffold0025 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 287 - 361
Target Start/End: Complemental strand, 54931 - 54856
Alignment:
Q  287 catgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaac-tttattattctt 361  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | || ||||||||||||    
T  54931 catgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgacttttattattctt 54856  T

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Target: scaffold0018 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 692 - 769
Alignment:
Q  285 atcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactt-tattattctt 361  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| | |||| ||||||||||    
T  692 atcatgacctacaaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgacttctattattctt 769  T

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Target: scaffold0013 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 288 - 361
Target Start/End: Complemental strand, 241119 - 241046
Alignment:
Q  288 atgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||  || | ||||||||||||||    
T  241119 atgacctacgaaaataaaactttaaacccaaaattaatttggttcttttattctgcaatgactttattattctt 241046  T

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Target: scaffold0094 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 288 - 361
Target Start/End: Original strand, 13510 - 13582
Alignment:
Q  288 atgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    ||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| | | ||||||||||||||    
T  13510 atgacctacgaaaataaaaatttgaacccaaaa-taatttggttcttttattccataatgactttattattctt 13582  T

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Target: scaffold0139 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 288 - 361
Target Start/End: Complemental strand, 4297 - 4225
Alignment:
Q  288 atgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    ||||||||||||||||| | |||||||| ||||| |||||||||||||||||||| | | ||||||||||||||    
T  4297 atgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgactttattattctt 4225  T

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Target: scaffold0321 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 361
Target Start/End: Complemental strand, 5292 - 5220
Alignment:
Q  288 atgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    ||||||||||||||||| | |||||||| ||||| |||||||||||||||||||| | | | ||||||||||||    
T  5292 atgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgaatttattattctt 5220  T

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Target: scaffold0180 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 342
Target Start/End: Original strand, 11410 - 11463
Alignment:
Q  288 atgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattcca 342  Q
    ||||||||||||||||| | |||||||| ||||| ||||||||||||||||||||    
T  11410 atgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattcca 11463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 361
Target Start/End: Original strand, 375320 - 375392
Alignment:
Q  288 atgacctacgaaaataaaactttgaacccaaaattaatttgattcttttattccacagtaactttattattctt 361  Q
    ||||||||| ||||||| | |||||||| ||||| |||||||||||||||||||| | | | ||||||||||||    
T  375320 atgacctacaaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgaatttattattctt 375392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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