View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_low_23 (Length: 360)
Name: NF17657_low_23
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 19412468 - 19412811
Alignment:
| Q |
19 |
tttttcacatttattacgaaaaattgatagtgtaattagtatgtacattgtgtataattattactaattaaactatcatctgtgttatatgtatttatcc |
118 |
Q |
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| T |
19412468 |
tttttcacatttattacgaaaaattgatagtgtaattagtatgtacattgtgtataattattactaattaaactatcatctgtgttatatgtatttatcc |
19412567 |
T |
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| Q |
119 |
agtgttgctcatgtaattggtatttgtggcagaataagggtttgtgtggaaatccagttctacaacacttccctcatatgatacactttttgttttaact |
218 |
Q |
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| T |
19412568 |
agtgttgctcatgtaattggtatttgtggcaaaataagggtttgtgtggaaatccagttctacaacacttccctcatatgatacactttttgttttaact |
19412667 |
T |
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| Q |
219 |
ttacactctctctctc-------------cactattttcacatacactctacaagatagagttgtgtttaacaactaactaacaagctgtaaaaactagt |
305 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
19412668 |
ttacactctctctctccactatgtccattcactattttcacatacactctacaagatagagttgtgtttaacaactaactaacaagctgttaaaactagt |
19412767 |
T |
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| Q |
306 |
taactgccactatagaacgttctaagctcaacattctgattcat |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19412768 |
taactgccactatagaacgttctaagctcaacattctgattcat |
19412811 |
T |
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