View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_low_24 (Length: 353)
Name: NF17657_low_24
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 15 - 338
Target Start/End: Original strand, 26597286 - 26597610
Alignment:
| Q |
15 |
acagatataggttaagaagttttcataatcctgaagcaaaacaaatttgcaaattcatgtgagttccacaacataatgttgtgaaaatttcaagcacgaa |
114 |
Q |
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| T |
26597286 |
acagatataggttaagaagttttcataatcctgaaaaaaaacaaatttgcaaattcatgtgagttccacaacataatgttgtgaaaatttcaagcaccaa |
26597385 |
T |
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| Q |
115 |
a-taagttgtttgtttaggcagatagtgaattgcaagactaacctcgtagagtggttctccatccacaactacccatggaacgtacttgtgaggaggctg |
213 |
Q |
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| T |
26597386 |
aataagttgtttgtttaggcagatagtgaattgcaagactaacctcgtagagtggttctccatccacaactacccatggaacgtacttgtgaggaggctg |
26597485 |
T |
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| Q |
214 |
tagagcatttgtttcatctgcatactttagctccaactgcatcgagatagtaattgctgcttgtgagataaaaaagttcagccaaacaatggtatgactc |
313 |
Q |
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| T |
26597486 |
tagagcatttgtttcatctgcatactttagctccaactgcatcaagatagtaattgctgcttgtgagataaaaaagttcagccaaacaatggtatgactc |
26597585 |
T |
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| Q |
314 |
aaacgcacatctgtcataaactcat |
338 |
Q |
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| T |
26597586 |
aaacgcacatctgtcataaactcat |
26597610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 92 - 331
Target Start/End: Original strand, 26601394 - 26601643
Alignment:
| Q |
92 |
gttgtgaaaatttcaagcac-gaaataagttgtttgtttaggcagatagtgaattgcaagactaacctcgtagagtggttctccatccacaactacccat |
190 |
Q |
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| T |
26601394 |
gttgcgaaaatctcaagcactgaaataaggcgtatgtttagctagatactgaattgcaagacttacatcgtagagtggttctccatccacaactacccac |
26601493 |
T |
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| Q |
191 |
ggaacgtacttgtgaggaggctgtagagcatttgtttcatctgcatactttagctccaactgcatcgagatagtaa----ttgctgcttgt--gagataa |
284 |
Q |
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| T |
26601494 |
gggacatacgtgtgaggaggctgtagagcatttgtttgagctgcatactttagatccaactgcatcaagatgataaccgttagttacttgtgagagagaa |
26601593 |
T |
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| Q |
285 |
aaaagttcagccaaacaatggtat---gactcaaacgcacatctgtcata |
331 |
Q |
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| T |
26601594 |
aaaaattcagccaaacaatggtatatagactcaaaagctcatctgtcata |
26601643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 26601239 - 26601297
Alignment:
| Q |
15 |
acagatataggttaagaagttttcataatcctgaagcaaaacaaatttgcaaattcatg |
73 |
Q |
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| T |
26601239 |
acagacatagcttaagaagtttgtataatcctgtaacaaaagaaatttgcaaattcatg |
26601297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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