View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_low_26 (Length: 344)
Name: NF17657_low_26
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 335
Target Start/End: Original strand, 55708700 - 55709018
Alignment:
| Q |
17 |
acctcttaaaaggaattttgcttcaatactaaagaattaactgaagcaaatgaactgttatgaatcttgatgcaccattaagtttgttttgtatttttgc |
116 |
Q |
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| T |
55708700 |
acctcttaaaaggaattttgcttcaatactaaagaattaactgaagcaaatgaactgttatgaatcttgatgcaccattaagtttgttttctatttttgc |
55708799 |
T |
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| Q |
117 |
actttcctgttccaatttgactaatttacaattgcatgtgctgattgcgcttctgcaggttttttctggcttgttttgcttcagacaacgcaatgcatat |
216 |
Q |
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| T |
55708800 |
actttcctgttccaatttgactaatttacaattgcatgtgctgattgcgcttctgcaggttttttctggcttgttttgcttcaggcaacgcaatgcatat |
55708899 |
T |
|
| Q |
217 |
caagcaagctcctcagttttgtcattgaagcccatggaaaatcttgatgatcctggtggtcaggctagctcttccaattgttcagcttgccacaacaaga |
316 |
Q |
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| T |
55708900 |
caagcaagctcctcagttttgtcattgaagcccatggaaaatcttgatgatcctggtgatcaggctagctcttccaattgttcagcttgccacaacaaga |
55708999 |
T |
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| Q |
317 |
atctatatctcagaataat |
335 |
Q |
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|||||||||||| |||||| |
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| T |
55709000 |
atctatatctcaaaataat |
55709018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 328
Target Start/End: Original strand, 49444474 - 49444801
Alignment:
| Q |
17 |
acctcttaaaaggaattttgcttcaatactaaag-aattaactgaagcaaatgaactgttatgaatcttgatgcaccattaag-------------tttg |
102 |
Q |
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|||| |||||||||||| ||||||| |||||||| ||||||||||||||||||||| | ||||||||||||| |||| |||| |||| |
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| T |
49444474 |
accttttaaaaggaattatgcttcagtactaaagcaattaactgaagcaaatgaacaggcatgaatcttgatggaccactaagaagaatttaatcctttg |
49444573 |
T |
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| Q |
103 |
ttttgtatttttgcactttcctgttccaatttgactaatttacaattgcatgtgctgattgc-gcttctgcaggttttttctggcttgttttgcttcaga |
201 |
Q |
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| T |
49444574 |
ttttctactttttcaccttactgttccaatttgaataatttacaattgcatgtgttgattgccgcttctgcaggtttcttctagcttattttgcttgagg |
49444673 |
T |
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| Q |
202 |
caacgcaatgcatatcaagcaagctcctcagttttgtcattgaagcccatggaaaatcttgatgatcctggtggtcaggctagctcttccaattgttcag |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | || |||||||||||||| ||||||||||||||||| |||| |
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| T |
49444674 |
caacgcaatgcatatcaagcaagctcctcagttttgtcattgaagcccattgcaaatttagaggatcctggtggtcacgctagctcttccaattgctcag |
49444773 |
T |
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| Q |
302 |
cttgccacaa-caagaatctatatctca |
328 |
Q |
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|||||||||| ||||||||||||||||| |
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| T |
49444774 |
cttgccacaaccaagaatctatatctca |
49444801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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