View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17657_low_27 (Length: 338)

Name: NF17657_low_27
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17657_low_27
NF17657_low_27
[»] chr8 (1 HSPs)
chr8 (41-332)||(41308562-41308855)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 41 - 332
Target Start/End: Original strand, 41308562 - 41308855
Alignment:
Q  41 tttcgaaccggattctctcaaatattcaatcatgtaattaaaacataatgtatcattaatctcatttatatagtttcgtccnnnnnnnnttaatttttat 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||    
T  41308562 tttcgaaccggattctctcaaatattcaatcatgtaattaaaacataatgtatcattaatctcatttatatagtttcgtccaaaaaaaattaatttttat 41308661  T
Q  141 aatacaaatcatctttattctaattatactacaagtaattatatatcacaagaacaa-tcaacataaaa-aataaatgctaagatgctaaacactcgtat 238  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  41308662 aatacaaatcacctttattctaattatactacaagtaattatatatcacaagaacaaatcaacataaaaaaataaatgctaagatgctaaacactcgtat 41308761  T
Q  239 aattttgaacggacaaggactttctatcttttttgaaggaaaaagtagagtgattttagacaaaattaagataaactataagagatgatgatgt 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41308762 aattttgaacggacaaggactttctatcttttttgaaggaaaaagtagagtgattttagacaaaattaagataaactataagagatgatgatgt 41308855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University