View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_low_28 (Length: 333)
Name: NF17657_low_28
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 30499929 - 30499614
Alignment:
| Q |
1 |
cctgacatcaaacgcatcattgtgaaaacagatgccattgaacatcaggtttggatttcaggtgctagagtgactgtatctacttagtcttttatatgtt |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30499929 |
cctgacatcaaacgcatcattgtgaaaactgatgccattgaacatcaggtttggatttcaggtgctagagtgactgtatctacttagtcttttatatgtt |
30499830 |
T |
|
| Q |
101 |
gtcttcttattatgaagtgattttcaggctcttgttaaattttttggaacccttcctcgaaaatgggcactggagtgtatggaacaacttttacttgtca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30499829 |
gtcttcttattatgaagtgattttcaggctcttgttaagttttttggaacccttcctcgaaaatgggcactggagtgtatggaacaacttttacttgtca |
30499730 |
T |
|
| Q |
201 |
accttgggggaaatcttaaaataattgtgcaggtactgtaacatggatattttttcttgttattatagtttctgtataaaataatcttactagtacctaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30499729 |
accttgggggaaatcttaaaataattgtgcaggtactgtaacatggatattttttcttgttattatagtttctgtataaaataatcttactagtacctaa |
30499630 |
T |
|
| Q |
301 |
tctgcagacttccaag |
316 |
Q |
| |
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|||||||||||||||| |
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| T |
30499629 |
tctgcagacttccaag |
30499614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 30540272 - 30539957
Alignment:
| Q |
1 |
cctgacatcaaacgcatcattgtgaaaacagatgccattgaacatcaggtttggatttcaggtgctagagtgactgtatctacttagtcttttatatgtt |
100 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30540272 |
cctgacatcaaacgcatcattgtgaaaactgatgccattgaacatcaggtttggatttcaggtgctagagtgactgtatctacttagtcttttatatgtt |
30540173 |
T |
|
| Q |
101 |
gtcttcttattatgaagtgattttcaggctcttgttaaattttttggaacccttcctcgaaaatgggcactggagtgtatggaacaacttttacttgtca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30540172 |
gtcttcttattatgaagtgattttcaggctcttgttaagttttttggaacccttcctcgaaaatgggcactggagtgtatggaacaacttttacttgtca |
30540073 |
T |
|
| Q |
201 |
accttgggggaaatcttaaaataattgtgcaggtactgtaacatggatattttttcttgttattatagtttctgtataaaataatcttactagtacctaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30540072 |
accttgggggaaatcttaaaataattgtgcaggtactgtaacatggatattttttcttgttattatagtttctgtataaaataatcttactagtacctaa |
30539973 |
T |
|
| Q |
301 |
tctgcagacttccaag |
316 |
Q |
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|||||||||||||||| |
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| T |
30539972 |
tctgcagacttccaag |
30539957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 143 - 237
Target Start/End: Original strand, 26029158 - 26029252
Alignment:
| Q |
143 |
tttggaacccttcctcgaaaatgggcactggagtgtatggaacaacttttacttgtcaaccttgggggaaatcttaaaataattgtgcaggtact |
237 |
Q |
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|||||||||||| ||||| |||||||||| ||||||||| || | |||||||| ||||| ||| ||||||||||| | |||||||| |||||||| |
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| T |
26029158 |
tttggaaccctttctcgagaatgggcacttgagtgtatgaaagatcttttactggtcaatcttaggggaaatcttcagataattgttcaggtact |
26029252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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