View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17657_low_3 (Length: 777)

Name: NF17657_low_3
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17657_low_3
NF17657_low_3
[»] chr7 (10 HSPs)
chr7 (16-223)||(31166861-31167068)
chr7 (15-219)||(21971546-21971750)
chr7 (16-125)||(27596384-27596493)
chr7 (127-213)||(27595999-27596084)
chr7 (115-225)||(32741787-32741897)
chr7 (115-223)||(28750927-28751034)
chr7 (115-223)||(38916392-38916500)
chr7 (137-223)||(21972092-21972177)
chr7 (115-219)||(27230474-27230578)
chr7 (117-194)||(15577501-15577578)
[»] chr2 (8 HSPs)
chr2 (16-223)||(39865205-39865412)
chr2 (15-223)||(29770774-29770982)
chr2 (16-223)||(4329606-4329814)
chr2 (137-223)||(4330136-4330221)
chr2 (115-223)||(9074605-9074713)
chr2 (115-223)||(30674429-30674537)
chr2 (115-219)||(9914204-9914308)
chr2 (137-201)||(29771299-29771362)
[»] chr8 (5 HSPs)
chr8 (15-223)||(26759211-26759419)
chr8 (42-222)||(146644-146825)
chr8 (115-223)||(186682-186790)
chr8 (115-223)||(308312-308420)
chr8 (137-200)||(147190-147252)
[»] chr3 (7 HSPs)
chr3 (15-223)||(23566795-23567003)
chr3 (15-223)||(39737630-39737838)
chr3 (115-199)||(30385749-30385833)
chr3 (137-201)||(39737230-39737293)
chr3 (137-201)||(23566459-23566522)
chr3 (115-199)||(53153855-53153939)
chr3 (115-221)||(785770-785876)
[»] chr5 (4 HSPs)
chr5 (15-223)||(39121740-39121948)
chr5 (115-223)||(14393983-14394091)
chr5 (115-223)||(25672272-25672380)
chr5 (116-223)||(20983551-20983658)
[»] chr6 (6 HSPs)
chr6 (395-648)||(31089717-31089972)
chr6 (115-223)||(604985-605096)
chr6 (332-381)||(31090032-31090081)
chr6 (115-223)||(8700896-8701004)
chr6 (115-199)||(12307301-12307385)
chr6 (115-199)||(7727381-7727465)
[»] chr4 (13 HSPs)
chr4 (16-223)||(12639628-12639835)
chr4 (42-226)||(28103803-28103988)
chr4 (109-223)||(38147399-38147513)
chr4 (135-223)||(917684-917772)
chr4 (22-76)||(918696-918750)
chr4 (115-199)||(23643434-23643518)
chr4 (137-202)||(28104360-28104424)
chr4 (115-223)||(43012762-43012870)
chr4 (137-199)||(12639211-12639273)
chr4 (137-200)||(919115-919177)
chr4 (115-199)||(54714873-54714957)
chr4 (113-144)||(918651-918682)
chr4 (106-151)||(23037993-23038038)
[»] chr1 (1 HSPs)
chr1 (115-196)||(40888819-40888900)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 4e-99; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 31166861 - 31167068
Alignment:
Q  16 cagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagagt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  31166861 cagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataattgttgtgcctttgaatattgaaagagt 31166960  T
Q  116 attgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgtt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||  |||||||||||    
T  31166961 attgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgagattcatttatttaattactatttattgtt 31167060  T
Q  216 ccttatcc 223  Q
    ||||||||    
T  31167061 ccttatcc 31167068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 21971750 - 21971546
Alignment:
Q  15 gcagagagataatagatagca-gtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaaga 113  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||| ||| |    
T  21971750 gcagagagataatagatagcaagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctgcataataatggttgtgcctttgaatattaaaaaa 21971651  T
Q  114 gtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||| ||||||||||    
T  21971650 gtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgagttaagtgagat-catttatttaattattatttattg 21971552  T
Q  214 ttcctt 219  Q
    ||||||    
T  21971551 ttcctt 21971546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 27596493 - 27596384
Alignment:
Q  16 cagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagagt 115  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||| ||| | ||||| | ||||||||| || |||| |||||  |||||||||||    
T  27596493 cagagagataatagataacagtcatatggttatgtaaacagatggaatgaaaaaggcgcgtttgtataataatagtcgtgcctttgagaattgaaagagt 27596394  T
Q  116 attgaatata 125  Q
    ||||||||||    
T  27596393 attgaatata 27596384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 27596084 - 27595999
Alignment:
Q  127 cttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattg 213  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||| | | |||||||||    
T  27596084 cttttattatttttaattagttgac-tatattacactttaattgagatgaattaagtgagatccatttatttattggctatttattg 27595999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 32741787 - 32741897
Alignment:
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 214  Q
    ||||||||||||| ||||||| |||||| ||||||| |||| ||||||||||||| || | ||  |||| ||||||||||||||| |  |||||||||||    
T  32741787 tattgaatatagcatttattaattttaaatagttgaaatattttatactttaattaaggtaaaccaagtgagatccatttatttattgcttatttattgt 32741886  T
Q  215 tccttatcccg 225  Q
    || ||||||||    
T  32741887 tcattatcccg 32741897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 28750927 - 28751034
Alignment:
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 214  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | || ||||| ||||||||||||||| |   ||||||||||    
T  28750927 tattgaatata-catttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccatttatttattgcctatttattgt 28751025  T
Q  215 tccttatcc 223  Q
    |||||||||    
T  28751026 tccttatcc 28751034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 38916392 - 38916500
Alignment:
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgt-tatttattg 213  Q
    |||| |||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | ||| |||| |||||||||||||| ||||| |||||||||    
T  38916392 tattaaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaagtgagatccatttattt-attgtctatttattg 38916490  T
Q  214 ttccttatcc 223  Q
    ||| ||||||    
T  38916491 ttctttatcc 38916500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 21972092 - 21972177
Alignment:
Q  137 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttccttatcc 223  Q
    ||||||||||||||||||| ||| | ||||||| ||||||||||||| |||| ||||||||||||   | || ||||||||||||||    
T  21972092 ttttaattagttgacatattttaca-tttaattaagatgaattaagtgagattcatttatttaatgcattttaattgttccttatcc 21972177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 219
Target Start/End: Complemental strand, 27230578 - 27230474
Alignment:
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgt-tatttattg 213  Q
    ||||||||||||| ||||||| |||||||||||||| |||| ||| ||||||||| || | ||| || | |||| ||||||||| ||||| |||| ||||    
T  27230578 tattgaatatagcatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaaatgagattcatttattt-attgtctattaattg 27230480  T
Q  214 ttcctt 219  Q
    ||||||    
T  27230479 ttcctt 27230474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 15577578 - 15577501
Alignment:
Q  117 ttgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccattt 194  Q
    ||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | || ||||| ||||||||||    
T  15577578 ttgaatatatcatttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccattt 15577501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 184; Significance: 4e-99; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 39865205 - 39865412
Alignment:
Q  16 cagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagagt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  39865205 cagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataattgttgtgcctttgaatattgaaagagt 39865304  T
Q  116 attgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgtt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||  |||||||||||    
T  39865305 attgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgagattcatttatttaattactatttattgtt 39865404  T
Q  216 ccttatcc 223  Q
    ||||||||    
T  39865405 ccttatcc 39865412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 29770982 - 29770774
Alignment:
Q  15 gcagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagag 114  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||    
T  29770982 gcagagagataatatatagcagtcatatggtggtgtaaacagatggaatggaaaggacgcgtctctgtaataatggttatgcctttgaatattgaaagag 29770883  T
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 214  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||  ||||||||||    
T  29770882 tattgattatagcttttattatttttaattagttgacatatattatactttaactgagatgaattaagtgagattcatttatttaattactatttattgt 29770783  T
Q  215 tccttatcc 223  Q
    |||||||||    
T  29770782 tccttatcc 29770774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 4329814 - 4329606
Alignment:
Q  16 cagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggac-gcgtctctataataatggttgtgcatttgaatattgaaagag 114  Q
    |||||| ||||||||||||| ||||||| || |||||||| |||||||||||||||| |||| | ||| ||||| ||||||| |||||  ||||||||||    
T  4329814 cagagaaataatagatagcaatcatatgattctgtaaacatatggaatggaaaggaccgcgtatgtatgataatagttgtgcctttgagaattgaaagag 4329715  T
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |   |||||| |||    
T  4329714 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatctatttatttattaactatttactgt 4329615  T
Q  215 tccttatcc 223  Q
    |||||||||    
T  4329614 tccttatcc 4329606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 4330136 - 4330221
Alignment:
Q  137 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttccttatcc 223  Q
    |||||||||||| |||||| ||| | ||||||||||||||||||||| |||||||||||||||||   |||| ||||||||||||||    
T  4330136 ttttaattagttaacatattttaca-tttaattgagatgaattaagtgagatccatttatttaatgcatattaattgttccttatcc 4330221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 9074713 - 9074605
Alignment:
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgt-tatttattg 213  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | ||  |||| ||||||||||||||| |||| |||||||||    
T  9074713 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaagtgagatccatttattta-ttgtctatttattg 9074615  T
Q  214 ttccttatcc 223  Q
    ||| ||||||    
T  9074614 ttctttatcc 9074605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 30674429 - 30674537
Alignment:
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 214  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| | ||||||| |||| ||| |||| ||||| ||||||||| |  ||||| |||||    
T  30674429 tattgaatataacatttattaattttaattagttgaaatattttacattttaattaagataaatcaagtgagatctatttatttattgcttattaattgt 30674528  T
Q  215 tccttatcc 223  Q
    || ||||||    
T  30674529 tctttatcc 30674537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 219
Target Start/End: Complemental strand, 9914308 - 9914204
Alignment:
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 214  Q
    ||||||||||||| ||||||| ||||| |||||||| |||| ||| ||||||||| |  | ||| |||| |||| |||||||||| |   ||||||||||    
T  9914308 tattgaatatagcatttattaattttagttagttgaaatattttacactttaattaaagtaaatcaagtgagattcatttatttattacctatttattgt 9914209  T
Q  215 tcctt 219  Q
    |||||    
T  9914208 tcctt 9914204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 29771299 - 29771362
Alignment:
Q  137 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaat 201  Q
    ||||||||||||||||||| ||| | | ||||||||||||||||||| |||| ||||||||||||    
T  29771299 ttttaattagttgacatattttaca-tataattgagatgaattaagtgagattcatttatttaat 29771362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 177; Significance: 5e-95; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 26759419 - 26759211
Alignment:
Q  15 gcagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagag 114  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  26759419 gcagagagataatagataacagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcctttgaatattaaaagag 26759320  T
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 214  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||    
T  26759319 tatttaatatagcttttattatttttaattagttggcatatattatactttaattgagatgaattaagtgagatccatttatttaattactatttattgt 26759220  T
Q  215 tccttatcc 223  Q
    |||||||||    
T  26759219 tccttatcc 26759211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 42 - 222
Target Start/End: Complemental strand, 146825 - 146644
Alignment:
Q  42 tggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaa-gagtattgaatatagcttttattattttt 140  Q
    ||||||| ||||||||||||||||||| ||||||| | ||||||||| || |||  |||||  ||||||| ||||||||||||||| |||||||| ||||    
T  146825 tggttgtataaacagatggaatggaaatgacgcgtttgtataataatagtcgtggctttgagaattgaaaagagtattgaatatagtttttattaatttt 146726  T
Q  141 aattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttccttatc 222  Q
    ||||||||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||| | |||||||||||| |||||    
T  146725 aattagttgacatatattacactttaattgagattaataaagtgagatccatttatttaatggctatttattgttcattatc 146644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 186790 - 186682
Alignment:
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 214  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| | ||||||| |||| ||| |||| ||||||||||||||| | | ||||||||||    
T  186790 tattgaatataacatttattaattttaattagttgaaatattttacaatttaattaagataaatcaagtgagatccatttatttattagctatttattgt 186691  T
Q  215 tccttatcc 223  Q
    |||||||||    
T  186690 tccttatcc 186682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 308420 - 308312
Alignment:
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 214  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | || ||||| ||||||||||||||| |   ||||||||||    
T  308420 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccatttatttattgcctatttattgt 308321  T
Q  215 tccttatcc 223  Q
    || ||||||    
T  308320 tcattatcc 308312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 147190 - 147252
Alignment:
Q  137 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaa 200  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||||| |||||||| |||||||    
T  147190 ttttaattagttgacatattttata-tttaattaagatgaattaagtgagatccatatatttaa 147252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 3e-90; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 23566795 - 23567003
Alignment:
Q  15 gcagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagag 114  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||    
T  23566795 gcagatagataatagatagcagtcatatggttgtttaaacagatggaatggaaaggatgcgtctctataataattgttgtgcctttgaatattgaaagag 23566894  T
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||  ||||||||||    
T  23566895 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgatattcatttatttaattactatttattgt 23566994  T
Q  215 tccttatcc 223  Q
    |||||||||    
T  23566995 tccttatcc 23567003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 39737630 - 39737838
Alignment:
Q  15 gcagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagag 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| | ||| ||||||||||||     
T  39737630 gcagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacacgtctctatattaatggttgtacctttaaatattgaaagaa 39737729  T
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 214  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| ||||||||||||  ||||||||||    
T  39737730 tattgaatatagcttttattatttttaattagttaacatatattatattttaattgagatgaattaaataagatctatttatttaattactatttattgt 39737829  T
Q  215 tccttatcc 223  Q
    |||||||||    
T  39737830 tccttatcc 39737838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 30385749 - 30385833
Alignment:
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttattta 199  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | ||| || | |||||||||||||||    
T  30385749 tattgaatatatcatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaaatgagatccatttattta 30385833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 39737293 - 39737230
Alignment:
Q  137 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaat 201  Q
    ||||||||||||||||||| ||| | ||||||||||||| ||||||| |||| ||||||||||||    
T  39737293 ttttaattagttgacatattttaca-tttaattgagatggattaagtgagattcatttatttaat 39737230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 23566522 - 23566459
Alignment:
Q  137 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaat 201  Q
    ||||||||||||||||||  ||| | |||| |||||||||||||||||||||  |||||||||||    
T  23566522 ttttaattagttgacatagtttaca-tttatttgagatgaattaagtaagatttatttatttaat 23566459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 53153855 - 53153939
Alignment:
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttattta 199  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | ||| |||| |||| ||| ||||||    
T  53153855 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaagtgagattcatctattta 53153939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 785770 - 785876
Alignment:
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 214  Q
    |||||||||||||  |||||| ||||||||| |||  |||| ||| ||||| ||| || | ||| |||| ||||||||||||||| |   |||||| |||    
T  785770 tattgaatatagcaattattaattttaattaattgcaatattttacactttgattaaggtaaatcaagtgagatccatttatttattgcctatttaatgt 785869  T
Q  215 tccttat 221  Q
    |||||||    
T  785870 tccttat 785876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 8e-88; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 39121740 - 39121948
Alignment:
Q  15 gcagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagag 114  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||    
T  39121740 gcagagagatgatagatagcagtcatacggttgtgtaaacagatggaatggaaatgacgcgtctctataataatggttgtgcctttgaatatcgaaagag 39121839  T
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 214  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||  ||||||||||    
T  39121840 tattgaatataacttttattatttttaattagttgacatatattatactttaattgagataaattaagtgagattcatttatttaattactatttattgt 39121939  T
Q  215 tccttatcc 223  Q
    |||||||||    
T  39121940 tccttatcc 39121948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 14394091 - 14393983
Alignment:
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 214  Q
    ||||||||||||| |||||||  ||||||||||||| |||| ||| | ||||||| |||| ||| |||| ||||||||||||||| |  |||||||||||    
T  14394091 tattgaatatagcatttattaaatttaattagttgaaatattttacattttaattaagataaatcaagtgagatccatttatttattgcttatttattgt 14393992  T
Q  215 tccttatcc 223  Q
    |||||||||    
T  14393991 tccttatcc 14393983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 25672380 - 25672272
Alignment:
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 214  Q
    |||| |||||||| ||||||| |||||||||||||| |||| ||| ||||||||| | || ||  |||| ||||||||||||||| |   |||| |||||    
T  25672380 tattaaatatagcatttattaattttaattagttgaaatattttacactttaattaatataaaccaagtgagatccatttatttattgcatattcattgt 25672281  T
Q  215 tccttatcc 223  Q
    |||||||||    
T  25672280 tccttatcc 25672272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 20983658 - 20983551
Alignment:
Q  116 attgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgt-tatttattgt 214  Q
    |||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | ||  || | |||||||||||||| ||||| |||||||| |    
T  20983658 attgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaaatgagatccatttattt-attgtctatttatttt 20983560  T
Q  215 tccttatcc 223  Q
    | |||||||    
T  20983559 ttcttatcc 20983551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 150; Significance: 7e-79; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 395 - 648
Target Start/End: Complemental strand, 31089972 - 31089717
Alignment:
Q  395 aaagaaatcattaagataccatattgcaatcaaaatcattctaataagcccttcaagcatctagatcttaccaaggagtctattttagttctaactgatc 494  Q
    |||||||| | ||||||||||||||||||||| |||||| |||||||||||||||| ||| | |||||||| |||||||| ||||||| | |||||||||    
T  31089972 aaagaaattaataagataccatattgcaatcataatcatcctaataagcccttcaaacatttggatcttac-aaggagtcaattttagatttaactgatc 31089874  T
Q  495 caaaaacagaagttattaaac--acaggagagctataacttaataatttagatataggaaaatgtt-ataaacacattccattatatgcttgttcaatac 591  Q
    | ||||| ||| |||||||||  | | ||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||| |||||||||||||||    
T  31089873 cgaaaacggaacttattaaacttaaaagagagctataacttattaatttagatataggaaaatgtttatatacacattcctttaaatgcttgttcaatac 31089774  T
Q  592 gatattgttctcctactattcattttcaaatttaatttttaacttttggtttaatta 648  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31089773 gatattgttctcctactattcattttcaaatttaatttataacttttggtttaatta 31089717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 605096 - 604985
Alignment:
Q  115 tattgaatatagcttttattatttttaatta---gttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttat 211  Q
    ||||||||||| | ||||||| |||||||||   ||||| |||| ||||||||||||| || | ||| |||| ||||||||||||||| |   |||||||    
T  605096 tattgaatataacatttattaattttaattattagttgaaatattttatactttaattaaggtaaatcaagtgagatccatttatttattgcctatttat 604997  T
Q  212 tgttccttatcc 223  Q
    ||||||||||||    
T  604996 tgttccttatcc 604985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 31090081 - 31090032
Alignment:
Q  332 atgaagtttaattaaatattagactaaagacggtaagatatttatcaaaa 381  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  31090081 atgaggtttaattaaatattagactaaagacgataagatatttatcaaaa 31090032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 8701004 - 8700896
Alignment:
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 214  Q
    ||||||||||| | ||||||| |||||||||||| | |||| ||| ||||||||| || | ||| |||| |||||||| |||||| |   ||||||||||    
T  8701004 tattgaatataacatttattaattttaattagttaaaatattttacactttaattaaggtaaatcaagtgagatccatctatttattgcctatttattgt 8700905  T
Q  215 tccttatcc 223  Q
    |||||||||    
T  8700904 tccttatcc 8700896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 12307301 - 12307385
Alignment:
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttattta 199  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| |||| ||| |||| ||||| |||||||||    
T  12307301 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaagataaatcaagtgagatctatttattta 12307385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 7727381 - 7727465
Alignment:
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttattta 199  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | ||  |||| ||||| |||||||||    
T  7727381 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaagtgagatcaatttattta 7727465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 6e-73; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 12639628 - 12639835
Alignment:
Q  16 cagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagagt 115  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |  || | |||||  |||||||||||    
T  12639628 cagagagataatagatagcaatcatatggttgtgtaaacagatggaatggaaaggatgcgtctctataataatagacgtacctttgagaattgaaagagt 12639727  T
Q  116 attgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgtt 215  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| ||||||||||||||| |   |||||||||||    
T  12639728 attgaatatagcttttattatttttaattagttgacatattttacactttaattgaggtgaattaagtgagatccatttatttattgcctatttattgtt 12639827  T
Q  216 ccttatcc 223  Q
    ||||||||    
T  12639828 ccttatcc 12639835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 42 - 226
Target Start/End: Complemental strand, 28103988 - 28103803
Alignment:
Q  42 tggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattg-aaagagtattgaatatagcttttattattttt 140  Q
    ||||||||| ||||  ||||||||||||||||||| | ||||||||| || |||| |||||  |||| ||||||||||||||||||||||||||||||||    
T  28103988 tggttgtgtgaacatgtggaatggaaaggacgcgtttgtataataatagtcgtgcctttgagaattggaaagagtattgaatatagcttttattattttt 28103889  T
Q  141 aattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttccttatcccgt 226  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||    
T  28103888 aattagttgacatatattacactctaattgagatgaattaagtgagatccatttatttaatgattatttattgttccttatcccgt 28103803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 38147513 - 38147399
Alignment:
Q  109 aaagagtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |   ||||    
T  38147513 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatccatttatttattgactatt 38147414  T
Q  209 tattgttccttatcc 223  Q
    || ||||||||||||    
T  38147413 tactgttccttatcc 38147399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 917772 - 917684
Alignment:
Q  135 atttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttccttatcc 223  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| | |||| |||||||||| |   |||||||||||| ||||||    
T  917772 atttttaattagttgacatatattacactttaattgagatgaattaacttagattcatttatttattgactatttattgttctttatcc 917684  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 918750 - 918696
Alignment:
Q  22 gataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgt 76  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  918750 gataatagatagcagtcatatgattgtgtcaacagatggaatggaaaggacgcgt 918696  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 23643518 - 23643434
Alignment:
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttattta 199  Q
    ||||||||||||| ||||||| |||||||||||||| |||| ||| ||||||||| |||| ||| |||| ||||| |||||||||    
T  23643518 tattgaatatagcatttattaattttaattagttgaaatattttacactttaattaagataaatgaagtgagatcaatttattta 23643434  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 28104360 - 28104424
Alignment:
Q  137 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaatt 202  Q
    |||||||||||||| |||| ||| | ||||||||||||||||||||| ||||||||||||||||||    
T  28104360 ttttaattagttgatatattttaca-tttaattgagatgaattaagtgagatccatttatttaatt 28104424  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 43012870 - 43012762
Alignment:
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgt-tatttattg 213  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | ||  || | |||||||||||||| ||||| |||||||||    
T  43012870 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaaatgagatccatttattt-attgtctatttattg 43012772  T
Q  214 ttccttatcc 223  Q
    ||||||||||    
T  43012771 ttccttatcc 43012762  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 12639273 - 12639211
Alignment:
Q  137 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttattta 199  Q
    ||||||||||||||||||| ||| || ||||||||| | |||||||| |||||||||||||||    
T  12639273 ttttaattagttgacatattttacacattaattgaggtaaattaagtgagatccatttattta 12639211  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 919115 - 919177
Alignment:
Q  137 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaa 200  Q
    |||||||||||||| |||| ||| | ||||||||||||||||||||| |||| |||||||||||    
T  919115 ttttaattagttgatatattttaca-tttaattgagatgaattaagtgagattcatttatttaa 919177  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 54714873 - 54714957
Alignment:
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttattta 199  Q
    ||||||||||| | ||||||| ||||||||| || | |||| ||| ||||||||| |||| ||| |||| | |||||||||||||    
T  54714873 tattgaatataacatttattaattttaattatttaaaatattttacactttaattaagataaatcaagtgaaatccatttattta 54714957  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 144
Target Start/End: Complemental strand, 918682 - 918651
Alignment:
Q  113 agtattgaatatagcttttattatttttaatt 144  Q
    ||||||||||||||||||||||||||||||||    
T  918682 agtattgaatatagcttttattatttttaatt 918651  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 23037993 - 23038038
Alignment:
Q  106 ttgaaagagtattgaatatagcttttattatttttaattagttgac 151  Q
    |||| ||||||||||||| | ||||||||| |||||||||||||||    
T  23037993 ttgagagagtattgaatacaacttttattaattttaattagttgac 23038038  T

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Target: chr1 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 40888900 - 40888819
Alignment:
Q  115 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttat 196  Q
    ||||||||||||| ||||||| |||||||||||||| |||| ||| ||||||||| |||| ||| |||| ||||||||||||    
T  40888900 tattgaatatagcatttattaattttaattagttgaaatattttacactttaattaagataaatcaagttagatccatttat 40888819  T

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