View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_low_30 (Length: 328)
Name: NF17657_low_30
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 139 - 311
Target Start/End: Complemental strand, 16044732 - 16044560
Alignment:
| Q |
139 |
atgataacaacgttttcgtttttccgattttgaggttttgatctatgcgcgcgattatggaacaattgaaaaaactttaaactgtaatgcttaaagaatc |
238 |
Q |
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| T |
16044732 |
atgataacaacgttttcgtttttccgattttgaggttttgatctatgcgcgcgattatggaacaattgaaaaaaatttaaactgtaatgcttaaagaatc |
16044633 |
T |
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| Q |
239 |
aggtgacatatattggatgtgacagacatttaagttttattttgttgaaacattataaaacagtccaacaatg |
311 |
Q |
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| T |
16044632 |
aggtgacatatattggatgtgacagacatttaagttttattttgttgaaacattataaaacagtccaacaatg |
16044560 |
T |
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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 16044858 - 16044791
Alignment:
| Q |
7 |
atttgttggagggtttttgcggagggacattgtttaaggagagatagtagaaggaagattggagaatg |
74 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16044858 |
atttgttggagggtttttgtggagggacattgtttaaggagggatagtagaaggaagattggagaatg |
16044791 |
T |
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