View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_low_33 (Length: 307)
Name: NF17657_low_33
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 30634891 - 30635178
Alignment:
| Q |
1 |
agcgtggcagagtttcttcgggtcgcattgaacaggtacggggaagtctcgggttcgggtaatgcaaatgggtgaggtgcatggggtgggggtgtaagaa |
100 |
Q |
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| T |
30634891 |
agcgtggcagagtttcttcgggtcgcattgaacaggtacggggaagtcttgggttcgggtaatgcaaatgggtgaggtgcatggggtgggggtgtaagaa |
30634990 |
T |
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| Q |
101 |
gaagaaagtagagggttgaaaatggagtttaaatttggaagttttttgcaatgaagccatgagagttcactccctgtgtcgaggaccatggtaacattct |
200 |
Q |
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| T |
30634991 |
gaagaaagtagagggttgaaaatggagtttaaatttggaagttttttgcaatgaagccatgagagttcactccctgtgtcgaggaccatggtaacattct |
30635090 |
T |
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| Q |
201 |
gtgggggtgagcctagtgttagtgaaactgttaaggttacattgtgttgaaaagagagttttgaagaaggttttggaagtgaaattgt |
288 |
Q |
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| T |
30635091 |
gtgggggtgagcctagtgttagtgaaactgttaaggttacattgtgttgaaaagagagttttgaagaaggttttggaagtgaaattgt |
30635178 |
T |
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Back To:
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Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 74 - 254
Target Start/End: Original strand, 34380785 - 34380965
Alignment:
| Q |
74 |
gaggtgcatggggtgggggtgtaagaagaagaaagtagagggttgaaaatggagtttaaatttggaagttttttgcaatgaagccatgagagttcactcc |
173 |
Q |
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||||||||||| ||||||||||| |||||||||| || |||||||||||| |||||| || || |||||||||||||||||||||||||||||||||| |
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| T |
34380785 |
gaggtgcatggagtgggggtgtatgaagaagaaacaagtgggttgaaaatgaagtttaggttagggagttttttgcaatgaagccatgagagttcactcc |
34380884 |
T |
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| Q |
174 |
ctgtgtcgaggaccatggtaacattctgtgggggtgagcctagtgttagtgaaactgttaaggttacattgtgttgaaaag |
254 |
Q |
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|||||||||||||||||||||| ||||||| || || || | || | |||||| ||||| |||||||||||||| |||| |
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| T |
34380885 |
ctgtgtcgaggaccatggtaactctctgtggaggagatccaacagtcaatgaaaccgttaacgttacattgtgttggaaag |
34380965 |
T |
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