View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_low_34 (Length: 302)
Name: NF17657_low_34
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 14726270 - 14725972
Alignment:
| Q |
1 |
aaccgacatggctgcataaccaaatgctgtctagcatctaataacactttcagaccaccctactagaaaggttcgatagtaacnnnnnnnnggttcgaaa |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||| |
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| T |
14726270 |
aaccgacatggctgcataaccaaatgctctctagcatctaataacactttcagaccaccctactagaaaggttcgatggtaacaaaaaaaaggtttgaaa |
14726171 |
T |
|
| Q |
101 |
cacatttctnnnnnnngccttacaagttacaaatacaatta-------------ttacattgtatagacaatttcctcacgataacatggacaaaatcac |
187 |
Q |
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||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14726170 |
cacatttctaaaaaaagctttacaagttacaaatacaattagcacaaaactacattacattgtatagacaatttcctcacgaaaacatggacaaaatcac |
14726071 |
T |
|
| Q |
188 |
atgnnnnnnntatatattgatccatggacaatggtgatttaactcaggataagtaagagcttatttcgaggaaaagttgcgattttgaaacaaaataat |
286 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14726070 |
atgaaaaaaatatatattgatccatggacaatggtgatttaactcaggataagtaagagcttatttcgaggaaaagttgcgattttgaaacaaaataat |
14725972 |
T |
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